Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00284 ATGAACGTGTCAACATTTCCAGTAGTTGAAGGTGTTGAAAAATTGGTTAACAATATCCATGAAAATATTGTGCAACATGGAGAGGAGGGTGTTGTTGATTATACACCACACTTGGAAATGGAGTTTGAGTCTGAAGTAGCGGCATATGAATTTTATAATGAGTATAGTAGGAGAATTGGATTTGGTATTCGTCGAGAGTATGGAAATAAAAGCAGAAAAGATGGGAGTTTGACTTCAAGAAGATTCACATGCTTTAAAGAGGGTAAACAAAGCGTTGACAAACGAGACCACTTGACAAAAGAGGGTAGAGCAGAAACCAGAACGGGTTGTCAAGCCCGTATGGTTATTTCACTTGATCGAAGTGTTGGAAAATACAAGGTTGTTGACTTTATAGCTCAACATAATCACGCTCTTCAACCGCCAGGGTATGTTCATATGATTCGCTCACATCGACGCTCACATGCATCTCAAGTTGTAGTGGCTGATGAATCTGGATTAAAACAAGATTTTCAAGAATATGTGTCCAAGCATGATGATGTAAAAGATATTATTGGTTGTTCAGGACAAGAAATTATGAATTATCTTCCAACTAAAAGGATGCGGTCGCTAATGTATGGTGAAGTGGGTGCGTTATTGATGTATTTCAAACGGCAAAGTGAAAATCCTTCATTCTTTTATGACTTCCAAATGGATGTTGAAGAGAAAATAACAAACATATTTTGGGCGGATGCACAAATGATAAATGATTATGAATACTTCGGCGATGTCATCACTTTTGACACAACATTAAAGTCAAATAAGGATTATCGGCCGTTGGGAGTATTTGTCGGACTAAATAATCACAAGCAAATGGTTGTTTTTGGTGCAACATTGCTATATGATGAAAAAATCCCTTCTTTTCAATGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGAAGAAAAGCCTAAAACCATTCTAACTGATCAAGATGCTGCAATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTGTGTACTTGGCATATAAGAGAAAATGCCCTGAAGCATGTGAACCATCTATATCAAAAGGGTTCACAATTCTACTCAGATTTTGAAGCATGCATTGATGTATATGAAGAGGAAGGTGAGTTTTTGAAAGCATGGAATGTTTTACTTGTTGAACATAATATTGCTGAAGATTCATGGCTCCATATAATTTTTCAACTGAAGGAAAAATGGGCATGGGCGTACGTTAAATTTTTTTTTACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGTTTTAATGTTGAGATGAAAAATCATTTAAAGTCAGATTTAAACTTAGTGCAATTTTTCACACACTTTGAAAGGGTTGTCAATGGAATACGGAACAATGAGTCAGAAGCCGATTATGAGTCTAGACATGAGTTGCCTAAACTGAAAATGAGAGGGGTTCGTATGCTTGTACAAGCCGGAAATATATACACTCCAAAAATCTTTGAGGAATTTCAAGAAGAATATGAGGAATATCTCGGGACTTGTGTAAAGAATTTGAAAGAAGGGTTGTATGTTGTTACAAATTATGATAACAGTAAGGAGCGAATGGTAATAGGGAATCTTGTGGATCAAAATGTTGCTTGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGCAATCATGCTTTGAAAGTTTTAGATGTTATGAATATTAAGCTAATTCCTCATCACTATATACTGAAGCGATGGACAAGAGATGCAAGGTTGGGAAGTAATCGAGATTGGAAAGGGCATCATGTTGAATTGGACATAAAAGCCCATTTTATGATGCGATGCAATGAGTTATGTCCTCGAATGGTTAAATTGACCAACAAAGCATCAAAGTTTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCTGATAAAATTATTGATGATATGTTGGCCAAAAAGTTTGTGGGCGGAGAATCACTTGAAATGTGTAATGCATCGGTATCCATTGGCAATGAAAAAAACGACAACAATGTGGACACTGTTGATGTTGGTGGGGAAAATGGTATAAAGAAGCTGAGATTGTTCAAATAG 2091 0.3611 MNVSTFPVVEGVEKLVNNIHENIVQHGEEGVVDYTPHLEMEFESEVAAYEFYNEYSRRIGFGIRREYGNKSRKDGSLTSRRFTCFKEGKQSVDKRDHLTKEGRAETRTGCQARMVISLDRSVGKYKVVDFIAQHNHALQPPGYVHMIRSHRRSHASQVVVADESGLKQDFQEYVSKHDDVKDIIGCSGQEIMNYLPTKRMRSLMYGEVGALLMYFKRQSENPSFFYDFQMDVEEKITNIFWADAQMINDYEYFGDVITFDTTLKSNKDYRPLGVFVGLNNHKQMVVFGATLLYDEKIPSFQWLFETFLKAMGEEKPKTILTDQDAAMAKAISLVMPETFHGLCTWHIRENALKHVNHLYQKGSQFYSDFEACIDVYEEEGEFLKAWNVLLVEHNIAEDSWLHIIFQLKEKWAWAYVKFFFTAGMRSTQLSESFNVEMKNHLKSDLNLVQFFTHFERVVNGIRNNESEADYESRHELPKLKMRGVRMLVQAGNIYTPKIFEEFQEEYEEYLGTCVKNLKEGLYVVTNYDNSKERMVIGNLVDQNVACDCRKFETHGILCNHALKVLDVMNIKLIPHHYILKRWTRDARLGSNRDWKGHHVELDIKAHFMMRCNELCPRMVKLTNKASKFHETYTFLSKVYEESDKIIDDMLAKKFVGGESLEMCNASVSIGNEKNDNNVDTVDVGGENGIKKLRLFK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00284 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 643 IPR031052 GO:0006355
Trre6g00284 696 ProSiteProfiles WRKY domain profile. 65 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00284 696 Pfam FAR1 DNA-binding domain 50 140 IPR004330 -
Trre6g00284 696 SMART 26again6 544 571 IPR006564 GO:0008270
Trre6g00284 696 Pfam MULE transposase domain 256 350 IPR018289 -
Trre6g00284 696 ProSiteProfiles Zinc finger SWIM-type profile. 522 569 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00284 Trre-Chr6 2036927 2039017 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre6g00284 MULE 7.1e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00284 - - psat:127085847 1137.87