Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00283 ATGAAGAAAACTTTTTCCACCAACAGCGCCACCCGGCGCGACTCATATTACCACCGTCAACCACCGTCTCCCATCTTTCATCACCGGAACCCCAGATTCCACTCCAACCACCGCCATCTCCCTACTCATCCCCGCCACCCCACTTTTACCATCAACCTCCGCTTCAACCACCGTATTCACCGCCGTGACCTCTGCCGCGACGACATTGAATCTCTGATAAAAAAATGCAATCCAAATCCCGACAATTTCACATTCAACACCAACGACAGCATCGCCGCTTCACTCAATTTCAATCAGAAAACAGACGCGATCAACGCCGTCGTTTGGTTCTGGCAATCACGCCTCTCAGTGAATTCAAATCCAATCCACGATTTCACGCCGGAGTTCATAATGAACTCCGACAATGTCGAACTCGATGTTCGTCTTCGAAACGTGTTCGTCAGCCACGTTAAGGAATTAATGAATGGAAACGAAGTGAATCGATGGATAGAAGAATGGGATCGATTATTAAAAGAGATTAATCATGTTAATAGCTTATTAAGTAAATCTTCTCCAATTAGGGTTCAAGAACAGAATATTGATAGAAAAAAAGCACTTGATGGTGAAAAGAGTTTAATTGAAAGAAGATTAAAGGAATTTGAATCTGCTATGGAGTGTATTTTGAAGTATTTAGAAGAGAAGAATAATCTTGAAAATGGTGATTATGATTATGATTATGAAGTTGTTAATGTGTTTAGGTTTGGTGAAAAATTTGATTGGGAGAAGATTTATAATTTAATTGTTAGGGAACGTTGTAGATTTGAAGAAGGTTTGCCTATTTATGCTTATAGGAGGGAAATTCTTCAGCAATTACATCATCAAAAGATAACAGTGTTGATTGGAGAGACGGGTTCTGGGAAGAGTACTCAAATAGTGCAGTTTCTCGCTGATTCAGGTCTTGGGGCCAATGAGTCAATTGTATGCACTCAACCTCGCAAGATTGCTGCGAAATCATTGGCTGAAAGGGTCCGGGAGGAATGTGGTGGATGTTATGAAGACAATTCAATCAAGTGTTATTCCACGTTTTCATCTTGGAACAAGTTTGATTCCAGGATAACCTTCATGACAGATCACTGTTTATTACAACACTACATGAGTGATAAGAATTTGTCTGGGATCTCGTGTATTATAGTGGATGAGGCTCATGAAAGGAGTATAAATACTGATTTACTGTTGGCGTTAATAAAGAATTTACTTTGTAAGAGGGTTGAAATGCGGCTTATCATCATGTCTGCTACGGCTGATGCAAAGCAACTATCTGATTACTTCTATAGTTGTGGAATTTTTCGTGTCCTTGGGAGAAACTTCCCTGTGGAGGTGAGATATGTTCCTTCTGACTGTGGAGGACGTTCTGGTTCTGCTGTTGTGGACTCGTATGTTTCCGATGTTGTCAAAATGGCAACTGAAATTCACTCAACAGAGAATGAAGGAACTATTCTTGCCTTTCTTACCTCACAGTTAGATGTAGAATGGGCCTGTGAAAAGTTTGAATCCCGCTCTGCAGTTGCTTTACCCTTGCATGGAAAACTTTCGTCTGAAGAGCAATTTCATGTTTTCCGGGACTATCCTGGAAAAAGAAAAGTGATATTTTCAACGAATGTTGCAGAGACGTCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGATTGGTTAAAGATAGTCGCTTCGATCCTTGCAGTGGAATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAACGCGCTGGTCGTGCTGGGAGGACCGAGCCTGGTAGGTGCTATAGGCTGTACTCAGAAGCTGATTATCAATCTATGGAACTAAATCAAGATCCTGAGATACGAAGAGTTCATCTTGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGATTTCGATTTTGTGGATGCTCCGAGCCCTAGCTCTATTGGGAGGGCAATCAGGAATCTAATTCAATTAGGAGCCATTAAACTGAACAATAATGTTCATGAATTAACTTCTGAAGGTAGGTGCTTAGCAAGAATGGAGATTGAACCGAGGCTTGGTAAACTCATTCTTGGCTGTTTCCAATATGCTTTGGGCAGGGAAGGCATTGTCCTTGCTGTCATGATGGCCAATGCTAGAAGCGTATTTTGCAGAGTTGGTAATGAAGGTGATAAACAAAGATCTGATTGTCTCAAAGTGCAATTTTGCCATTGCGATGGCGACCTTTTTACTCTTCTGTCTGTGTACAAAGAATGGGAAGCTCTGCCTCAAGATATGAGGAATAAATGGTGTTGGGAAAACAGCATCAATGCGAAATCTATGAGGAGATGCCAAAACACCTTTTTGGAGTTAGAATCTTGCCTAGAGAGCGAACTTGGCTTTGTTGTTCCAAGCTACTGGCGCTGGGACCCTCACATCCCTTCTATTCATGATAAGAATATGAAAATAGCTATATTGTCCTCACTATCCGAAAATGTAGCCATGTACTCTGGACGCAATCAACTTGGTTACGAAGTAGCTCAAACTGGGCAACTTGTTCAACTACATCCATCATGTTCCTTGCTCATATTTGCCCAGAGGCCTAGTTGGGTGGTTTTTTATGAGCTCCGTTCAGAGTCTAATGAATATTTGTTCTGTGTGAGTGCTATTGACTTTCAATCATTATACAGCCTTAAAACTCCTCCCTTGTTTGATGTATCCAAGATGGAAGAGCGGAAGTTGCAAATGAGGACATTGTCTGGGTTTGGCAAACATGTTCTCAAGAGATTTTGTGGAAAAGGAAATTTGCTCGGTCATGTTTCTCGTATTAGGAAAGCTTGTATGGATGAACGAATCTTTGTTGAAGTGAATTTTGACGAGAACCAAGTTCAGTTGTATGCCAGTTCACATGATGTGAATGCAGCTAGTAAGTTGGTGAACGATGTTTTAGCATATGAGAAAAAGAGGTTATACAATGAATGTATGGAAAAATGTTTGTATCACGGGTCTGGTTCTTTATCACCCGTGGCTTTGTTTGGCTCTGGTGCTGAGATAAAGCATTTGGAGCTTGAGAAGCATTCGTTGAGTGTTGATGTGTTTCACCCAAATGTAAATACAATTGATGAAATGGAGCTCTTGATGTTTTTTGAGAAAAATACTTCTGGTTGTATATGTGACATGCACAAGTTCACAAGCATGGTGAAGGATGTTGAGGATAAAGAAAAATGGGGCAGGATAACATTTCTGACCCCCAATGCTGCCAAAAGAGCTGCCGAGCTGGATGGAGAAGAGTTTCGTAACTCGCCCTTGAAAATAGTTCCTTCACAATCAGCTATGGGAGATAAAACATTTTCATTTCCTGCAGTTGAAGCAAGAATTTCTTGGCCTCGTAGGCCTACCAGAGCAATTGGCATGGTTATATGTGATAAAAGTGATGTCAATTTCATCTTGAGAGATTTTAATAACCTTATAATAGATGATAGATATATTCGTTGTGCACCCAACGATAAATATATGGACAGAATTATGATAAGTGGGCTTGACAAAGAGCTTCCCGAGACTGAAATTTTGGATGTACTAAGATCTGCTACAAGTAGAAGGATTCAAGATTTTTTCTTTTTGAGGGGAGATGCTGTTGTAAATCCATCATGCAGTGTCATTGAAGAGGCACTCTTGAAAGAAATTTTACCCTTAATGCCCAAAAGGAACCCTCACATTAGTTCTTGCCGTGTTCAGGTGTTTCAACCTAAGCCGAAGGATTATTTGATGAGTGCTTTAATTCATTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGAACATTGATGGAAAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTCCCAGCAGTTGTTTCACAGCACCTTGATATTTTCTTCTCCAGTGTATCATGTGATTAAAGAACAACTGGAAAAAGTACTGGCAAGTTTCAAAAATTTAGAAGGTCTTCAATGGAACCTAGACAGGACACCTAATGGTTCCCACCGAGTTAAGATAACAGCCAGTGCCACAAAGACGGTGGCAGAAGGTAGGAGACCTCTGGAAGAACTATGGAGAGGGAAAACCATAGTCCACGATAACCTCACCCCTTCCGTTCTACAGCTCATGTTGTCCAAATATGGTTACAGTCTTACAAGCTCAATACAGCAGGCGACAACAACTTACATTCAATTTGACAGGCGCAACCTGAATATACGGATATTTGGTTCGCCAGACAAGATTGCTTTGGCTGAGCAGAAGTTAATTCAATCTCTCTTGTCCCTCCATGAAGAAAAGGAGTTAGTAATCCATCTGAGAGGGAGGGACCTACCTTCTGATTTAATGAAGCGAGTGGTTAAGAATTTCGGGCCAGATCTTCACGGACTAAAAGAGAAGGTACCTGGAGCAGATCTTAGGCTCAACACACGTGACCAGACAATCCTTCTTCATGGTAACAAGGAGTTCAAATCACGAGTAGAAGAAATAACTTTCGATATTGCACGCTTAAGTCATCAATTAATCGAGAAACTTGACATTGGACCTAGTTGTCCAATTTGCTTGTGTGAGGTTGATGATGGATATCAACTTGAAGGCTGTGGTCATTTGTTTTGCCGGTCGTGTATGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATACGTTGTGCTCATCAGGGATGTGGAGATCTTATTTTGCTTGCAGATTTCAGAACTCTCCTATCAAATGATAAGTTGGAGGAACTTTTCAGGGCATCATTGGGAGCTTTTGTAGCATCAAGTTCAGGAACTTATAGGTTTTGCCCGTCTCCTGACTGCCCCTCAATCTATCGAGTTGCAGATCCCGACACTGCTAGCGTGCCATTTGTTTGTGGGGCATGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTACCATCCATATGTTTCCTGTGAGAGATATCGAGAATTAAAGCATGACCCAGATTCATCATCTCTGAGGGATTGGTGCAAAGGGAAAGAACACGTCAAGTGGTGCTCGGCGTGCGGCCATGTAATTGAAAAGGTAGACGGGTGCAATCACATTGAGTGCAAGTGTGGAAAACATATCTGTTGGGTTTGCTTGGAGTTCTTTACAAGCAGTGTTGAATGTTACGAACACATGGACATACACGATAACTTTCCGGTTGCATTGAATTACAGGAAAAACAACCGTGAGCTGTTGCAGGTATTTCTTGAGAAAATTGAAGAAGTGAAAGAAAAGTATAGGCAAGTGCTAACCAAAGTCGCGCTCCTTCAAAGAGTATTCAATACTCCAGGATCTATTATAACCTTCAGCTGTCAATATGTCATCCTCAAGGACTATAGATTCAAATATGACACAAGTTCCATATCTAAGCTTGTTTTGCTGCATTTGCATGCAACCAAAATCCGAGCATCTATTACAGCAGGCGCCATGCAGTTGATACAGATGACGAGTATCAATGCATTTATGATTGTTAAGGTTGATACAGATGACGAGTATGAGTTTGCAGGCGACATGCAGGTTCAAGGATTGCCTACGGTTTTCTTTATTAGTCCTGATCCGAAAAAAGACGCTATTCGAACCGAAGGACTTGTACCAATACAGATGATGAGAGATATCATTGACAAAGAAATGTGA 5679 0.4127 MKKTFSTNSATRRDSYYHRQPPSPIFHHRNPRFHSNHRHLPTHPRHPTFTINLRFNHRIHRRDLCRDDIESLIKKCNPNPDNFTFNTNDSIAASLNFNQKTDAINAVVWFWQSRLSVNSNPIHDFTPEFIMNSDNVELDVRLRNVFVSHVKELMNGNEVNRWIEEWDRLLKEINHVNSLLSKSSPIRVQEQNIDRKKALDGEKSLIERRLKEFESAMECILKYLEEKNNLENGDYDYDYEVVNVFRFGEKFDWEKIYNLIVRERCRFEEGLPIYAYRREILQQLHHQKITVLIGETGSGKSTQIVQFLADSGLGANESIVCTQPRKIAAKSLAERVREECGGCYEDNSIKCYSTFSSWNKFDSRITFMTDHCLLQHYMSDKNLSGISCIIVDEAHERSINTDLLLALIKNLLCKRVEMRLIIMSATADAKQLSDYFYSCGIFRVLGRNFPVEVRYVPSDCGGRSGSAVVDSYVSDVVKMATEIHSTENEGTILAFLTSQLDVEWACEKFESRSAVALPLHGKLSSEEQFHVFRDYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPCSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQSMELNQDPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIGRAIRNLIQLGAIKLNNNVHELTSEGRCLARMEIEPRLGKLILGCFQYALGREGIVLAVMMANARSVFCRVGNEGDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPQDMRNKWCWENSINAKSMRRCQNTFLELESCLESELGFVVPSYWRWDPHIPSIHDKNMKIAILSSLSENVAMYSGRNQLGYEVAQTGQLVQLHPSCSLLIFAQRPSWVVFYELRSESNEYLFCVSAIDFQSLYSLKTPPLFDVSKMEERKLQMRTLSGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVEVNFDENQVQLYASSHDVNAASKLVNDVLAYEKKRLYNECMEKCLYHGSGSLSPVALFGSGAEIKHLELEKHSLSVDVFHPNVNTIDEMELLMFFEKNTSGCICDMHKFTSMVKDVEDKEKWGRITFLTPNAAKRAAELDGEEFRNSPLKIVPSQSAMGDKTFSFPAVEARISWPRRPTRAIGMVICDKSDVNFILRDFNNLIIDDRYIRCAPNDKYMDRIMISGLDKELPETEILDVLRSATSRRIQDFFFLRGDAVVNPSCSVIEEALLKEILPLMPKRNPHISSCRVQVFQPKPKDYLMSALIHFDGRLHLEAAKALENIDGKVLPGCLSWQKIKSQQLFHSTLIFSSPVYHVIKEQLEKVLASFKNLEGLQWNLDRTPNGSHRVKITASATKTVAEGRRPLEELWRGKTIVHDNLTPSVLQLMLSKYGYSLTSSIQQATTTYIQFDRRNLNIRIFGSPDKIALAEQKLIQSLLSLHEEKELVIHLRGRDLPSDLMKRVVKNFGPDLHGLKEKVPGADLRLNTRDQTILLHGNKEFKSRVEEITFDIARLSHQLIEKLDIGPSCPICLCEVDDGYQLEGCGHLFCRSCMVEQCESAIKNQGSFPIRCAHQGCGDLILLADFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPDTASVPFVCGACYSETCTRCHLEYHPYVSCERYRELKHDPDSSSLRDWCKGKEHVKWCSACGHVIEKVDGCNHIECKCGKHICWVCLEFFTSSVECYEHMDIHDNFPVALNYRKNNRELLQVFLEKIEEVKEKYRQVLTKVALLQRVFNTPGSIITFSCQYVILKDYRFKYDTSSISKLVLLHLHATKIRASITAGAMQLIQMTSINAFMIVKVDTDDEYEFAGDMQVQGLPTVFFISPDPKKDAIRTEGLVPIQMMRDIIDKEM 1892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00283 1892 PANTHER ATP-DEPENDENT RNA HELICASE 265 907 - -
Trre6g00283 1892 Pfam DEAD/DEAH box helicase 277 432 IPR011545 GO:0003676|GO:0005524
Trre6g00283 1892 FunFam RBR-type E3 ubiquitin transferase 644 750 - -
Trre6g00283 1892 Pfam Helicase associated domain (HA2) 662 756 IPR007502 GO:0004386
Trre6g00283 1892 MobiDBLite consensus disorder prediction 1 29 - -
Trre6g00283 1892 Pfam Helicase conserved C-terminal domain 483 600 IPR001650 -
Trre6g00283 1892 Gene3D - 258 447 IPR027417 -
Trre6g00283 1892 SUPERFAMILY RING/U-box 1524 1600 - -
Trre6g00283 1892 SUPERFAMILY RING/U-box 1607 1663 - -
Trre6g00283 1892 Gene3D - 1653 1778 - -
Trre6g00283 1892 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 445 IPR014001 -
Trre6g00283 1892 Gene3D - 645 749 - -
Trre6g00283 1892 SUPERFAMILY RING/U-box 1679 1727 - -
Trre6g00283 1892 CDD TRX_family 1838 1889 - -
Trre6g00283 1892 ProSitePatterns Zinc finger C2H2 type domain signature. 1710 1730 IPR013087 -
Trre6g00283 1892 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 387 396 IPR002464 -
Trre6g00283 1892 Pfam Zinc finger, C3HC4 type (RING finger) 1525 1556 IPR018957 GO:0046872
Trre6g00283 1892 SUPERFAMILY Thioredoxin-like 1835 1890 IPR036249 -
Trre6g00283 1892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1523 1601 IPR013083 -
Trre6g00283 1892 SMART helicmild6 503 601 IPR001650 -
Trre6g00283 1892 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 475 641 IPR001650 -
Trre6g00283 1892 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 254 447 - -
Trre6g00283 1892 CDD BRcat_RBR 1607 1660 - -
Trre6g00283 1892 ProSiteProfiles TRIAD supradomain profile. 1521 1736 IPR044066 -
Trre6g00283 1892 SMART ibrneu5 1592 1657 IPR002867 GO:0008270
Trre6g00283 1892 SMART ibrneu5 1658 1723 IPR002867 GO:0008270
Trre6g00283 1892 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1653 1731 - -
Trre6g00283 1892 CDD SF2_C_RHA 449 609 - -
Trre6g00283 1892 SMART ultradead3 269 454 IPR014001 -
Trre6g00283 1892 ProSitePatterns Zinc finger RING-type signature. 1541 1550 IPR017907 -
Trre6g00283 1892 Coils Coil 1747 1774 - -
Trre6g00283 1892 SMART ha2_5 661 757 IPR007502 GO:0004386
Trre6g00283 1892 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 828 901 IPR011709 -
Trre6g00283 1892 CDD DEXHc_RHA-like 286 444 - -
Trre6g00283 1892 MobiDBLite consensus disorder prediction 1 16 - -
Trre6g00283 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 779 IPR027417 -
Trre6g00283 1892 Pfam IBR domain, a half RING-finger domain 1601 1657 IPR002867 GO:0008270
Trre6g00283 1892 Gene3D - 448 620 IPR027417 -
Trre6g00283 1892 ProSiteProfiles Zinc finger RING-type profile. 1525 1568 IPR001841 -
Trre6g00283 1892 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 448 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00283 Trre-Chr6 2012170 2021507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00283 1541 1713 ARIADNE family AT3G27710 30.286 4.93e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00283 K12818 - gmx:100810008 2465.26