Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00277 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAGGGAGAAGTCAAGAAAGATAACATTTCAAACGAGAGTGAAAGGCTTACTAAAAAAAGCGCATGAACTTTCCACTCTTTGTGAAATTGACGTTTGTGTAATTTTCTATGCCCCCAATTTTGAAGGTCAAGGATATGATGGACCTAAAACATGGCCTAAAGAGACAAATGAGGTACAAAGAATCCTTCAAAAGTACCACAACACAACAATTGATCGACGTACTAAGATCTATCATGCTCAAGAATATTTTAAAGAAAGAATGAAAAAAGTCGAATTCGACATTTCCAAAATGCGCAAAAAGATGTTAAAGATCTTGTATCCAACTTGGGATGAATCTTTCAATTCTCTTGGAGCGGAACAAATGAGGTTATTGGCTAGCATATTGGATGCTAAACTTGATGCTTGTAATCAAATGATGAATATCCTTAAAGGAGATGCTAAGGGAAAAACAATAGTTCATGAATCATACAAGGTTGATAAACCTAATACTTCCTATTTGACCTCAACTCCAAATAGCTACTTCAATCTCATGCAAAACAACATGTCTCAAGCACAAATTTACCCTTCATTGATGAATATTAGTGACAAAAACTCCTTAGGGTTTTGGCCACTTCATTTGGGACAAAGCTCTCAACCTTCTTCGATGCTTTCTAGTGCACAAAGTTCCTACCGGGTGGAGTCTGATGAGGGTAGATATCCTTACAAGCAAGTCGATGGTAATTGGGCTAACTGGGTTGATGCTAATACTTTCTACGACCCAAAAATTGGTACGAAAAATAAGGATGAAGGTGAAAATGATGAAAAATTGTCACCATACCATTACAATGAAAATACAATGACAATGCAATCGTATCCTATTGGTATGGATACTCTTCCTTTCCAAAACCTTCCAAACCTACCACCACATGGATATCAACTTAATGGATTCTATGATACAAATATTTTTGAAGCTCATATGTTCAACAACTACACGGATGGAAGGAAGTAG 1023 0.3646 MGRGRISMELIQREKSRKITFQTRVKGLLKKAHELSTLCEIDVCVIFYAPNFEGQGYDGPKTWPKETNEVQRILQKYHNTTIDRRTKIYHAQEYFKERMKKVEFDISKMRKKMLKILYPTWDESFNSLGAEQMRLLASILDAKLDACNQMMNILKGDAKGKTIVHESYKVDKPNTSYLTSTPNSYFNLMQNNMSQAQIYPSLMNISDKNSLGFWPLHLGQSSQPSSMLSSAQSSYRVESDEGRYPYKQVDGNWANWVDANTFYDPKIGTKNKDEGENDEKLSPYHYNENTMTMQSYPIGMDTLPFQNLPNLPPHGYQLNGFYDTNIFEAHMFNNYTDGRK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00277 340 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Trre6g00277 340 Gene3D - 14 103 IPR036879 GO:0003677|GO:0046983
Trre6g00277 340 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g00277 340 CDD MADS_SRF_like 2 80 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre6g00277 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Trre6g00277 340 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre6g00277 340 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g00277 340 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g00277 340 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g00277 340 PANTHER MADS BOX PROTEIN 3 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00277 Trre-Chr6 1991550 1992572 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00277 1 142 Type I MADS-box Gene Family AT5G55690 38.514 7.53e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g00277 SRF-TF 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00277 - - tpra:123913303 531.561