Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00275 ATGTCATTTGTAGAAATATCACATCACATAATTCATACTTGGTGGAATTTTACGACGAGTGGTTGGCAAGAAAAGAAAGTCAGGAAACACAGGCCAAGAGAAAATAAACAAAAAATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAAGTCAAGAAAGTTAACATTTCAAAAGAGAAAGAAGGGATTATTGAAAAAAGCGCATGAACTTTCCACTCTTTGTGGTGTTGACGTTTGTATAATTCTCTATGCTCCCAATTTTGAAGGTCAAGGATATAATGAGCCTGAAACATGGCCTAATAAAAACCCAGAAAAGGTACAAAGAATCCTTCAAAAGTACTACAACACAACAATTGATCGACGTCCTAAGATCTATGATGCTCAAGAGTATTTTAAAGAAAGGATGAAGAAAGTCGAATTTGATATTTCCAAAGTGCGCAAGCAGATGTTAAAGATCATGTATCCAACTTGGGATGAATCTTTCAATTCTCTTGGAGATGAGCAAATGAGGTTATTTGCTAGCACATTGGATACTAAACTTGATGCTTGCAATCAAAAGATGAATATGCTAAAAGGAGATCTTAAGGGAAAAACAATAGCTCATGAATCATACAAGGTCGATAAACCTAATACTTCCAATTTGACCTCAACTCCAAATAGCTACTTCAATCTCATGCAAAACAACATGTCTCAAGCACAAATTTACCCTCCATTGATGAATATTAGTGACAAAAACTCCTTAGGATTTTGGCCACTTCATTTAGGACAAAGCTCTCAACCTTCTGCGACGCTTTCTAGTGCACAAGGTTCCTACTATGTGGAGTCTGATGATGATAGATATACACAATCTTACCCCTGCAATCAAGTCGATAATAATTGGGCTAAATGGGTCAGTCATGCTGATGCTAATATTTTCCATGATTCAAAATTCGACACGAAAAAGAAGGATGAAGTTGAAAATGTTGAAAATTTATCACCATACTATTACAATGGAAATACAATGACAATGCAATCATATCCTATTGGTATGCATACTCTTCCTTTGCAAAATCTTCCAAACCTACCACCACAAGGATATCAACTTAATGCATTCTATGATATCGATATTCTTCAAGCTCATATGTTCAACAACTACATGGATGGAAGGAAGTAG 1161 0.3566 MSFVEISHHIIHTWWNFTTSGWQEKKVRKHRPRENKQKMGRGRISMELIQKEKSRKLTFQKRKKGLLKKAHELSTLCGVDVCIILYAPNFEGQGYNEPETWPNKNPEKVQRILQKYYNTTIDRRPKIYDAQEYFKERMKKVEFDISKVRKQMLKIMYPTWDESFNSLGDEQMRLFASTLDTKLDACNQKMNMLKGDLKGKTIAHESYKVDKPNTSNLTSTPNSYFNLMQNNMSQAQIYPPLMNISDKNSLGFWPLHLGQSSQPSATLSSAQGSYYVESDDDRYTQSYPCNQVDNNWAKWVSHADANIFHDSKFDTKKKDEVENVENLSPYYYNGNTMTMQSYPIGMHTLPLQNLPNLPPQGYQLNAFYDIDILQAHMFNNYMDGRK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00275 386 Gene3D - 51 142 IPR036879 GO:0003677|GO:0046983
Trre6g00275 386 CDD MADS_SRF_like 40 117 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre6g00275 386 PRINTS MADS domain signature 41 61 IPR002100 GO:0003677|GO:0046983
Trre6g00275 386 PRINTS MADS domain signature 61 76 IPR002100 GO:0003677|GO:0046983
Trre6g00275 386 PRINTS MADS domain signature 76 97 IPR002100 GO:0003677|GO:0046983
Trre6g00275 386 ProSiteProfiles MADS-box domain profile. 39 99 IPR002100 GO:0003677|GO:0046983
Trre6g00275 386 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Trre6g00275 386 SUPERFAMILY SRF-like 40 136 IPR036879 GO:0003677|GO:0046983
Trre6g00275 386 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 49 89 IPR002100 GO:0003677|GO:0046983
Trre6g00275 386 PANTHER MADS BOX PROTEIN 41 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00275 Trre-Chr6 1983218 1987043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00275 39 269 Type I MADS-box Gene Family AT5G55690 33.191 9.70e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g00275 SRF-TF 7.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00275 - - tpra:123913303 583.948