Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00272 ATGGACGCTCTTTCTAGCATAGCATCAAATGTGGCTTTACCTCTCCTACGACAATTTACTTATGTGTTGATGTACAACAGTTACCTCATTGAACTTGAGACTGAAATTCAGAAGCTGCAGAGGGAGGAGAAAGAAATGAAGCACAGTGTTGAAGCTGCAAAAAGGAATGGGGAAGAGATTGAAGACACGATTCGCGACTGGTTTTCTAGAGTGCAAGCATCCATAGAAGAAGCACAAGGTTTCCTTCGAGGCGAAGACAAAGAAAGAGTTGGATGCTTAGATGTGTACTCGAGGTACACGAACAGTCAGAGAGCAAAAAGCCTGGTTGATATTCTTTGTGAAATCAGAAAAGAAACATTTGATAGAATTTCATACCGTTGTGCATTGAAATGCAATTTCAGTTCTAGTGCTAGAGGTTATGTGGATTTGGAATCAAGAACAACAATGTTGAATGAAATTTTGAATGTCTTAAAAGAGGATTCTACTGTTCACATGATTGGAGTGTATGGAATGGCTGGTGTAGGTAAAACTGCATTGGTGAAGGAGCTAGCATGGAAGGCCGACAAAGATGGTATATTCGATGTTGTAGTGGTGGCTAATGTGACAAAATCTCCTAACATGGGAACGATTCGAGCCGAAATAGCTGATGGGTTAGGGCTTAAGTTTGATGAGCTGACTGAGGTTGGACGGGCGAGTCGGTTACGTCAAAGGATTAGGCAGGAGATGAAGATTCTTGTGATATTGGAGGATATTTGGGGAAAGCTTAGTTTAACCGAGGTTGGTGTTCCTTTTGGCGACGATCATGAGGGTTGCAAAGTGTTGGTAACATCCAGAGATCTTAGTGTGTTGACTACTGACTTAGGTGCAAAGAAGGTTTATAGGCTTGAAGTTTTGTCCGAGGATGAGAGTTGGAAATTGTTTGAAAAGAGGGGAGAGAATGCTGTTAAAGATCTTAGCATTCAACCTGTAGCAATGAAAGTAGCCAAACATTGTGCTGGTTTGCCGCTTTTGATTGTTAATTTGGTGGAAGCATTGAAGAACAAGGACTTATATGCTTGGAAGGATGCACTCGAGCAGTTAACAAATTTCGACTTTGATGGATGTTTCTATTCTAAAGTGTATTCAGCTATTGAACTAAGTTATGATTATTTAGAAAGTCAAGAACTCAAAACATTCTTCCTTCTTTTAGGTTCAATGGGAAATGGTTATAACATAAAAGATTTGTTGGTGTATGGTTGGTGTTTAGGTTTGCATAAACATGTCGATACATTGGCAGATGGAAGAAACAGACTTCACAAATTGATAGACAATTTGAGAGATGCATGTTTTCTGCTTGAAGGCGAAAGAGATTCGGTTGAGGCGCTTGAAGTTGTTCGCGTTGTGGCTGCCTCCATTGCGTCCAAGCTCAAGCCGTTCTTTGCTGTGGAGAGAAACACCAAATTGAAAGAATGGCCAAGAAAAGATTTTTTGAAAAATTGTCATCATATTTTCTTGGATTGGTGTTTGATCGATGAACTTCCTGAGAGGTTAGAATGTCCTAACTTGAAGATACTCAAACTCCACTCTCAAGGTAACCATTTGAAAGTTCATGATAATTTCTTTGATCAAATGATAGAACTTAAGGTACTAAGTTTAGGAGGCTTGAATTGTACTCCATCACTTCCTTCATCTCTTGCTCTTTTGACAAACCTCCAAGCACTTGCTCTTTGTAAATGCGTGTTGGAAGATATTTCTATTGTCGGAGAAATCACAAGTTTAGAGATTCTTAATCTCGAAAAATCCGAGCTTAGAGTGATCCCTCCTGAAATACAAAAATTGATAAATCTACGGTTGCTCAACTTGACCGATTGCTCGACACTAGAAATAGTACCTCGCAATCTGCTATCGAGCCTGACAAGCTTAGAAGAGCTCTATATGGGGATCTCTAATGTTCAATGGGAGGTTAAGGTTAAAGAAATTGAAAACCTAGACAAAATTTCAATTCTCAGTGAGTTGAAAAATTTGCATCAACTGTCAACTTTGAATATGCACATAAATGATGCTTCACTTTTTCCTCGAGACATGCTTTCCTTTGGAAGACTAGAAAGTTACAAGATTTTGATTGGTCAAGGATGGAAATTTTCTGAGGAGGAGTCTGAGAACTACAAAAGTTCAAGAATTCTTAAGCTCAATTTGAGCACGGATCCAAGAATCCTCATGGATTACGGAATAAAGATGTTGATGAATCGCGCTGAAGATTTGTATTTAGCTGAACTGAAGGGTGTCAAAGAAGTACTTTATGAATTGAATGATGAAGGATTTTCGCGATTGAAGCATCTTAATATTCAAAATTGTGAAGAAATGGAGAGCATTATTGGATCAACCATATGGTCTCATCATGATCATGCTTTTCCCAACTTGGAATCTCTGATCCTTCATAATGTGATGAAATTGGAGAGAATCTGCAGTGAACCACTTCCAGCACAGGCTTTTGCAAAACTACAAGTTGTTAAAGTGAAAAATTGTGATATGATGGAGTTTGTTTTCTTGCATTCAATGGTTCAACACCTTTCAGAACTTGTTGAAATTGAGATTTCTGAATGTAGAATTATGAATTATATCATAGCCAAGCAAAGACAAGAGGATGAAGGAGAAACTGACAAGATCGCACTCCCAAAATTGCGTTCGCTAACACTTGAATCTTTACCTTCCCTTGTTAGTCTCTCTCCTGAGTCATGCATTAAGGATAGTGAAAACAACAATGATTTCTCCAGTCAACTTTTGAGTGATAAGGTTGAATTTCCATGTTTGGAGACCTTGAAGCTTCACTCAATCAATGTCCAGAGGATATGGGATGACCAACTTTCAGCACATTCTTGCTTTGAAAATTTGACCAAATTGACTGTAGATGGTTGTGAAAAGTTGAAATATCTATTTTCATACTCAGTGGCTGAAAGACTTGTCAAACTCGAACATCTTTCAATTAGTTCATGCAAATTGGTAGAGGAGATATTTGTCCCTGATGAAATTATGAGTCGCATTGCTCATGTCCATGATGAAATTATGAGTCACATTCCTCATATTAGAAAATCTTCACATGTTGAAATGGTTCCAATTTTCCCCAACTTGGAGACATTAGTGATTTCTAACATGGATAACTTGAAGTCAATATGGCCCAACCAACTCACTCAGAACTCATTTTGCAAGTTACAAAAAATGGAAATCACATCATGTGACCAGCTTTTGAATGTGTTCCCAAGTCATGTGCTAAACAAATTACAAAGCATGGAATCATTGAGTATAAGCAACTGTCTTGCACTAGAAGTTGTATATGAAATAGATGCTATAAGAGAAGAAGAAGAGCTTGAAATTTCACTGAGGACTTTATCTTTAGGAAATTTACCAAATCTAAAGTATTTGTGGAATAAGGATCCTCAAGGAAATATCAAGTATCAAAACTTGTTTATGGTTAAAGTAACAAAATGTGAAAGTCTAAAACATATGTTTCCATTTTCTGTGGCTAAAGATCTTTTGCAATTACAAGTCCTTGAGATAAGTGATTGTGGTGTAGAAGAAATTATTGCAAAGGATCAAGGAGATGATAAAGAGGAACATGTTGGACTTGTTTTCACAAGATTAGTGTCGTTGAAGTTTTTGAATTTGCAAGAACTTAGATGCTTTTGTAGTGGAAATCACAACTTTAGATTCCCATTGTTGAATAAATTATATGTGGTTGAGTGTCCTAAAATGGAAACTTTCTCTCATGGAATCTTAAGGGCATCAATTCTTAGAAGAATATGTTTGAATCAAAATGGAGATCAATGGTACTGGGAATCTGACCTTAATACTTCTATAAGAAAGCTCTTCAATAAAGGTTTCCAAGGAAGACTATTGGTTTCATAG 3882 0.3735 MDALSSIASNVALPLLRQFTYVLMYNSYLIELETEIQKLQREEKEMKHSVEAAKRNGEEIEDTIRDWFSRVQASIEEAQGFLRGEDKERVGCLDVYSRYTNSQRAKSLVDILCEIRKETFDRISYRCALKCNFSSSARGYVDLESRTTMLNEILNVLKEDSTVHMIGVYGMAGVGKTALVKELAWKADKDGIFDVVVVANVTKSPNMGTIRAEIADGLGLKFDELTEVGRASRLRQRIRQEMKILVILEDIWGKLSLTEVGVPFGDDHEGCKVLVTSRDLSVLTTDLGAKKVYRLEVLSEDESWKLFEKRGENAVKDLSIQPVAMKVAKHCAGLPLLIVNLVEALKNKDLYAWKDALEQLTNFDFDGCFYSKVYSAIELSYDYLESQELKTFFLLLGSMGNGYNIKDLLVYGWCLGLHKHVDTLADGRNRLHKLIDNLRDACFLLEGERDSVEALEVVRVVAASIASKLKPFFAVERNTKLKEWPRKDFLKNCHHIFLDWCLIDELPERLECPNLKILKLHSQGNHLKVHDNFFDQMIELKVLSLGGLNCTPSLPSSLALLTNLQALALCKCVLEDISIVGEITSLEILNLEKSELRVIPPEIQKLINLRLLNLTDCSTLEIVPRNLLSSLTSLEELYMGISNVQWEVKVKEIENLDKISILSELKNLHQLSTLNMHINDASLFPRDMLSFGRLESYKILIGQGWKFSEEESENYKSSRILKLNLSTDPRILMDYGIKMLMNRAEDLYLAELKGVKEVLYELNDEGFSRLKHLNIQNCEEMESIIGSTIWSHHDHAFPNLESLILHNVMKLERICSEPLPAQAFAKLQVVKVKNCDMMEFVFLHSMVQHLSELVEIEISECRIMNYIIAKQRQEDEGETDKIALPKLRSLTLESLPSLVSLSPESCIKDSENNNDFSSQLLSDKVEFPCLETLKLHSINVQRIWDDQLSAHSCFENLTKLTVDGCEKLKYLFSYSVAERLVKLEHLSISSCKLVEEIFVPDEIMSRIAHVHDEIMSHIPHIRKSSHVEMVPIFPNLETLVISNMDNLKSIWPNQLTQNSFCKLQKMEITSCDQLLNVFPSHVLNKLQSMESLSISNCLALEVVYEIDAIREEEELEISLRTLSLGNLPNLKYLWNKDPQGNIKYQNLFMVKVTKCESLKHMFPFSVAKDLLQLQVLEISDCGVEEIIAKDQGDDKEEHVGLVFTRLVSLKFLNLQELRCFCSGNHNFRFPLLNKLYVVECPKMETFSHGILRASILRRICLNQNGDQWYWESDLNTSIRKLFNKGFQGRLLVS 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00272 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 395 IPR027417 -
Trre6g00272 1293 SUPERFAMILY L domain-like 489 1164 - -
Trre6g00272 1293 Pfam NB-ARC domain 147 382 IPR002182 GO:0043531
Trre6g00272 1293 Gene3D Ribonuclease Inhibitor 475 876 IPR032675 -
Trre6g00272 1293 Coils Coil 22 56 - -
Trre6g00272 1293 SUPERFAMILY RNI-like 767 995 - -
Trre6g00272 1293 Gene3D - 124 291 IPR027417 -
Trre6g00272 1293 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1118 1251 - -
Trre6g00272 1293 Gene3D - 297 385 IPR042197 -
Trre6g00272 1293 Gene3D Ribonuclease Inhibitor 880 1078 IPR032675 -
Trre6g00272 1293 Gene3D Ribonuclease Inhibitor 1079 1281 IPR032675 -
Trre6g00272 1293 SUPERFAMILY RNI-like 1124 1265 - -
Trre6g00272 1293 PRINTS Disease resistance protein signature 238 252 - -
Trre6g00272 1293 PRINTS Disease resistance protein signature 165 180 - -
Trre6g00272 1293 PRINTS Disease resistance protein signature 604 620 - -
Trre6g00272 1293 PRINTS Disease resistance protein signature 331 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00272 Trre-Chr6 1962890 1967621 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00272 158 438 WRKY Transcription Factor Family AT5G45050 26.174 3.00e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00272 - - gmx:100814903 1782.3