Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00268 ATGGGAAATGATGAAAACCCTCCAAATATACCAACGATTCCTGGCATGGCGAACAATAATATTCTTGGATGTTGCAAACCTTTTGAGAAGAAATTATCAACGAGTGATTTGAAGGTGGATTTAAATAGATTGTTTTTGGACAAGGGCCATGTGAAACAATATTTTTTACCCTTGTTGAAAGAAGGCGAAGATGTTGAAGAAGGAATAGACGTTGTTGTGTATGACATGCAAGGCAAAACGTTCAACATGGAGTTCAAGTTTTGGAGTGGAAAATTTTATGTTCTCAATGGAGGATGGAAGACTTTCTTCAAATCGCATTCTTTGCGAGCAAATCAAGATCATGTTACAGTGTGGATGTTTCGTCATTCTGAAACCGGTAATTTGTGTTTTGCTCTTAGTGTGAAAAGAGTGTAG 414 0.372 MGNDENPPNIPTIPGMANNNILGCCKPFEKKLSTSDLKVDLNRLFLDKGHVKQYFLPLLKEGEDVEEGIDVVVYDMQGKTFNMEFKFWSGKFYVLNGGWKTFFKSHSLRANQDHVTVWMFRHSETGNLCFALSVKRV 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00268 137 Gene3D - 28 137 IPR015300 -
Trre6g00268 137 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 23 134 IPR005508 GO:0003677
Trre6g00268 137 CDD B3_DNA 28 130 IPR003340 GO:0003677
Trre6g00268 137 Pfam B3 DNA binding domain 28 128 IPR003340 GO:0003677
Trre6g00268 137 SUPERFAMILY DNA-binding pseudobarrel domain 28 130 IPR015300 -
Trre6g00268 137 ProSiteProfiles B3 DNA-binding domain profile. 29 136 IPR003340 GO:0003677
Trre6g00268 137 SMART B3_2 28 136 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00268 Trre-Chr6 1945310 1945723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00268 25 132 B3 DNA Binding Superfamily AT4G03170 46.789 1.90e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g00268 B3 3.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00268 - - tpra:123915381 244.588