Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00267 ATGAAAAGCAAAGTCAGTGGTCTTTATTTGATGGACTTCAGTCATGATGAACATGAAGCTGCTGATGGTCTTGTTTTATTGCAAACACTGTTCGAAAAGAAAAAAAATTTCATCGCCCAAATCATTGTTCCTGATGTTGTTATGGGAAATGATGAAAACCCTCCAAATATACCAACGATTCCTGGCATGGCGAACAATAATATTCTTGGATGTTGCAAACCTTTTGAGAAGAAATTATCAACGAGTGATTTGAAGGTGGATTTAAATAGATTGTTTTTGGACAAGGGCCATGTGAAACAATATTTTTTACCCTTGTTGAAAGAAGGCGAAGATGTTGAAGAAGGAATAGACGTTGTTGTGTATGACATGCAAGGCAAAACGTTCAACATGGAGTTCAAGTTTTGGAGTGGAAAATTTTATGTTCTCAATGGAGGATGGAAGACTTTCTTCAAATCGCATTCTTTGCGAGCAAATCAAGATCATGTTACAGTGTGGATGTTTCGTCATTCTGAAACCGGTAATTTGTGTTTTGCTCTTAGTGTGAAAAGAGTGTAG 555 0.3676 MKSKVSGLYLMDFSHDEHEAADGLVLLQTLFEKKKNFIAQIIVPDVVMGNDENPPNIPTIPGMANNNILGCCKPFEKKLSTSDLKVDLNRLFLDKGHVKQYFLPLLKEGEDVEEGIDVVVYDMQGKTFNMEFKFWSGKFYVLNGGWKTFFKSHSLRANQDHVTVWMFRHSETGNLCFALSVKRV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00267 184 SMART B3_2 75 183 IPR003340 GO:0003677
Trre6g00267 184 Gene3D - 75 184 IPR015300 -
Trre6g00267 184 Pfam B3 DNA binding domain 75 164 IPR003340 GO:0003677
Trre6g00267 184 CDD B3_DNA 75 177 IPR003340 GO:0003677
Trre6g00267 184 SUPERFAMILY DNA-binding pseudobarrel domain 75 177 IPR015300 -
Trre6g00267 184 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 68 181 IPR005508 GO:0003677
Trre6g00267 184 ProSiteProfiles B3 DNA-binding domain profile. 76 183 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00267 Trre-Chr6 1945310 1945959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00267 73 179 B3 DNA Binding Superfamily AT4G03170 47.222 6.00e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g00267 B3 7.9e-09 CL0405