Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00266 ATGAAACGGAGAAGTTCTAATAATCGAAAGATGAAAGCAAAAGTCAATAAAGATGACTTTACCCCTGAAGAATATGAAATATCTTCAACTTTTCTTTTATTGGGAACGCCATTCATAATGGAGGAGACTCCAAATTTAGAAATAACTCTGGCGGCGAATGAATCAATTCATGAAACAACCGATAACAACAATGTTGATTTAATGCCACCACAAATCAATATCCCTAACGATGTTACGGATAAAAAATACAACCCTCCAAATATACCAACGATTCCCGGCGTACCAAACAATAATATTGTTGGTTGTTGCAAGCCTTTTGAGAAGAAACTATATCCTAGTGATTTAAATGAGAATCTGAATAGATTGATGATGAACACTAAATATGTGATAGAATATTTCTTGCCCTTGTTGAGAGAAGGAGAAAAAGTCGAAGATGGAATAAATGTCGTTGCATATGACATGCAAGGAGAAACGTTCAATATGACGTTCAAGTATTGGAAAAGTGGAAGATATTATATCCTTAATGGAGAGTGGAAGACTTTCTTCCAAACACATAACTTGAAAGCAAATCAAGATCATTATATTACAGTTTGGATGTTTCGTCATTCAGAAACCGATAACTTATGCTTTGCTCTTAGTGTGAGAACAGAACAAATAAAAAAGGAGGATGTGATTAGAGAGAAGAAAAAAAGGAAGTCATACAGTGTTGGAAACTTGGGCGCAAATTTGAGAGTAGCAGATGGTGAAGGGACATCACGTCCTGCAGAGTTGACGCCTGAAATGCATGAATTGATACAAGAAATGGCGCAAGATGAGACTCTTATGCAACATGTTCTTCCAATACAACAAACCTCCTTAGATGACAAGTTGGAGCATGAACCCACTGCAGACCCCAATATTGATGATCCATATGAAGTTTTTGGTAAAGAGAAGGAAGACAAAGATGAGAATTTTGATGATCAGTAA 966 0.3613 MKRRSSNNRKMKAKVNKDDFTPEEYEISSTFLLLGTPFIMEETPNLEITLAANESIHETTDNNNVDLMPPQINIPNDVTDKKYNPPNIPTIPGVPNNNIVGCCKPFEKKLYPSDLNENLNRLMMNTKYVIEYFLPLLREGEKVEDGINVVAYDMQGETFNMTFKYWKSGRYYILNGEWKTFFQTHNLKANQDHYITVWMFRHSETDNLCFALSVRTEQIKKEDVIREKKKRKSYSVGNLGANLRVADGEGTSRPAELTPEMHELIQEMAQDETLMQHVLPIQQTSLDDKLEHEPTADPNIDDPYEVFGKEKEDKDENFDDQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00266 321 SUPERFAMILY DNA-binding pseudobarrel domain 106 210 IPR015300 -
Trre6g00266 321 CDD B3_DNA 106 215 IPR003340 GO:0003677
Trre6g00266 321 Gene3D - 101 228 IPR015300 -
Trre6g00266 321 MobiDBLite consensus disorder prediction 283 321 - -
Trre6g00266 321 MobiDBLite consensus disorder prediction 286 315 - -
Trre6g00266 321 Pfam B3 DNA binding domain 106 190 IPR003340 GO:0003677
Trre6g00266 321 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 93 215 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00266 Trre-Chr6 1941941 1943786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00266 104 212 B3 DNA Binding Superfamily AT4G03170 36.697 9.84e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g00266 B3 2.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00266 - - tpra:123915381 232.646