Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00249 ATGCTAAGTGGATGGAGTTATGATGTGTTCCTTAGTTTTAGAGGTGAAGATACAAGAACAAGTTTCACTGGCTCTCTCTATCATGGTTTATGCCAAAAGGGTATTAATGTTTTCATAGATGATGAAGAGCTTAGAAGAGGAGAACAAATATCTCCATCTCTTCTTACAGCCATTGAAGAATCTAGAATTTCTATCATTGTGTTTTCTACAAACTATGCATCTTCAAGTTGGTGTCTTGATGAGCTTGCTAAGATTCTTGAGTGTTGGAAAACAAAAGGACAATTAGTCTTTCCAGTTTTCTACTATGTTGACCCTTCTTTTGTAAGGCATCAAAGAGGAAGTTTTGGAACAGCAATGGCTAAACATGAAGTTACATTCAAGGATGATGTTGAAAGGTTGAAGAAGTGGAAAAAAGCCTTGTTTGATGCAGCCAATTTTTCAGGTTGGAGCTTAGAAAATGGGTATGAATTTGAGCTTATCATAAGAATCATTGAGGAGGTCTCTAGCAAATTAAATCACACCCTTTTGCATATTGCTGAGCATCCAGTTGGACTAGAAACTCGCATATCGGAAGTGAAATCACTTTTGCAAACTGAAAATCTTGGTGAAAAAGTTTCTTTCATTGGAATCCATGGACTTGGAGGTATAGGAAAAACAACAATTGCAAGAGCATTGTACAACTCAATTGCTAATCAATTTGATGCCACAAGTTTCCTTACTGATATAAGAGAAAGTTCAACTCAAAGACAAGGCTTAGTTCAACTTCAAGAAACACTTCTTTATGAAACACTTGGTATAAAAAATATTATGTTAGGAAATGTTTATAAAGGTATCCCTATTATAAAAAAGAGATTATGTGGCAAAAAAGTGCTTCTGATTCTTGATGATGTTGACAAATTGGAACAGCTTCAAGCATTAGCAGGAGGACGTGATTGGTTCGGTTTCGGAAGTAAAATAATCATAACAACAAGAGATAAGCAATTATTAGCTAATCATCAAGTTGACAAAACTTATGAAGTAAAGAAACTAAATCATGAAGAAGCTTTTGAACTTTTTACATGGAATGCATTCAAAAGGAAAGGAACTGATGAGGGCTATATGGAGATTTCCAACAATGTTGTGCTCTATGCTGAAGGACTTCCATTGGCTTTGAAAGTAATGGGATCAAATTTGTTTGGTAAAACAGTTGAGGAATGGAAATCTGCATTGGCTAAATATGAAAAAATTCCTAATAAAGAAGTTCAGAATGTACTTAGAGTAACTTTTGATAATTTAGAAGAGAATGAGAAGGAAATTTTCTTGGATATAGCATGTTTCTTCAAGGGAGAGACGGTGGAATATGTCGAAAAAACACTTCAAGCATGTGGTTTCTTTCCGAAATTCGGTATCAGTGTACTTACTGATAGGTCTCTTGTAAGTATTGATGAATATAACAGATTGCGAATGCATGATTTGATACAAGACATGGGGAGGGAAGTTGTTAGAGAAGTTTCTCCGTTAGAGCCTGGAAAACGGAGTAGGATATGGAATCATGAAGATGTTATTGAAGTACTAACTGAAAGTTCGGGGACTAATAGTATTCAAGGCATGATGGCGGATCTTCCTGATCAATATATGGTACACTTGAAAGATGATTCCTTCGGAAAGATGACAAATCTTAAAATTCTTATTGTTAGAAATGGACACTTTTATGGAAGCCCTCAACATCTTCCAAACAATTTAAGGTTGCTTGATTGGGTGGAATATCCTTCATCATCTTTACCATCAACTTTTCATCCAAAGAAACTTGTTGTACTCAACTTGTCGCGCAGTCGTTTTACAATGCAAGAGCCATTCAAGCATTTGGATTCTTTGACTTCTATGGATTTGAGTCATTGTCAGTTCTTAACAAAGCTACCTGACATTTCTAGTGCTCCAAATTTAACAGAACTAAATCTTGACTATTGTACAAATCTAGAACAAGTTCATGACTCAGTTGGATTTCTTGACAAACTTATTGAGTTAAGGGCTTATGGATGCACTAAGCTTAAGGATTTTCCACAAGCTATCAAATTGACATCATTGCAAACTCTAATTCTTAATTGGTGCTCAAGTCTTCAAAAATTCCCAACAATTTTGGAGAGAATGGAAAATCTCACATCTATTTCCATTGAAGGAACTGCTATTGAAGAATTGCCTCCTTCCATTGGAAATCTTGTTGCTCTTCAAGAATTTAGCATGACATCTTGCTTGAGCCTCAAGGAACTCCCAGAAAACATTGACATGTTGCATAATCTTAGAAACCTTGATATTGAAGGTTGTCCACAACTTAGAAGTTTTTTGACAAAATTGAGAGAATTAGGACAATCTACTCTTACCTTTGGTAATGTTCAATCATTGAATCTAGAAAACTGTGGCCTTATAGATGAAGATCTTCCCATAATTTTCAAGTGTTTCCCAAATTTATCATCATTAGTCCTTTCAGGAAGTAATTTTGTAACTCTTCCAAGGTGCATCGAAGAATACTATCCCTTGGACTTTCTTCACTTAGACGACTGCAAACAGCTCCAAGATATTCCATGCCTTCCTCCCAATTTACAATTCATCAATGCAAGAAATTGCATATCATTGACTGCAGAGTCATCAAACTTATTACTAAGCCAGGAAACTTTTGAGGCATATGAGTTACAAGTTATGGTTCCAGGAACAAGGGTTCCAGAATGGTTTGACCACATCACCAAAGGAGAATATATGACATTTTGGGTCAGAAAAAAATTTCCAGCAATTATTTTATGCTTTGCTCTTGCAATAGAGAGTAAAATGAAGAAGAGTTTCAACTGCGAAATCCGATTCTATATAAACAGTGATGAAGTTTATGAATTGGAAATACCAATAATGTATTCAGAACTGGTGACAAATCATCTATGGCTTTCTGATTTGAGGACTCATTCATCCACCAGTTTGAATGATATTGAATCATATCTAGTTGATGATGATTGGAATCAGATTGAGATTTCATGTAAAAAAGTAATTGGACCATCAAATATGACTATAAGCTGGTGTGGAGTTCATGTATGTAAGCAAGAAGCTAACATGGAAGATATTCTATTTGAAGATCCTTATCTTGATTCAGATTTAAGCATAGAAACTGAGAATTTTGATTTGGATAAAAACAATGAAGAAAGCATAGAGAACTTGGAAGATTATAATATTTCTGTATGCCACAATAACATGGATCATAATCAAGAAAAGATTTTATTGCATACCAAAACATTGGACGGTGTTACTGAAGTTTCAAAGGATATAGTTTGTTTTGATGGCACCAATGTTGTCAGAGAATCAAACATGGTAGCTTCTGATTATCAAGAAAAATCTCGACAAAAATCCGAAGTCACAAATCTTGATGATGAAGAAATGGAAGCATTTTATGCTATTCTTGATGCTGAGACCTCAGTTCTTTCACTTGCCAATGACAACAAAGTGGTTTCTGAATCATCCAAAAGAATAATTCCAAGTGAAGAAACCAAGAAAGCTTTGAAGACACTTGAAGATTTTCTCACCAAAGATTTTTCTGTTCTTTTAAGGCCTAATGAGTACAATACCATGGAATCTACCTTAGATTACCTCACACATTTACCTACAGAAGATGGAATATCTGTTGAAATAAGATCATTGGTTAAAGAAGTTTCAAGACAGTTCACTTCTTGGAGTTATGATTACACACATGAAGGCAAGAAAATCGAGGTTACAAAAGCTAAGTTGTTGAAAAGTGATGAACTTGAAGAGGGTCTTGAAGCTAACAAAAAACTTTTTAGAGAAGTTAAGTATTTGGAAAATGAGTTATGCAATGAGTTGGAATATTTAGAGGAAAGAAAGAAGGAACTAGAAGAACAAATAAATGCTGTTAAGGCTAATATATCTGCTTCACAAGTAGCTAAGAACACTGCTTCTAATACAAAGAGAGAAATCTTTGAAAATGCAAAGATTCTAAAAGTTCAAAGAGATGAGTTAAGGGAACAAGTACATTGTTTGAGAGATGAGCATGATTTGGCTAAGAAAATTCAGGCAAATATTAGAGATGAATGGTCAAAGCTAGGTGAAAAATTTAGCAACATTGCAGACAAAAGTTAG 4110 0.3467 MLSGWSYDVFLSFRGEDTRTSFTGSLYHGLCQKGINVFIDDEELRRGEQISPSLLTAIEESRISIIVFSTNYASSSWCLDELAKILECWKTKGQLVFPVFYYVDPSFVRHQRGSFGTAMAKHEVTFKDDVERLKKWKKALFDAANFSGWSLENGYEFELIIRIIEEVSSKLNHTLLHIAEHPVGLETRISEVKSLLQTENLGEKVSFIGIHGLGGIGKTTIARALYNSIANQFDATSFLTDIRESSTQRQGLVQLQETLLYETLGIKNIMLGNVYKGIPIIKKRLCGKKVLLILDDVDKLEQLQALAGGRDWFGFGSKIIITTRDKQLLANHQVDKTYEVKKLNHEEAFELFTWNAFKRKGTDEGYMEISNNVVLYAEGLPLALKVMGSNLFGKTVEEWKSALAKYEKIPNKEVQNVLRVTFDNLEENEKEIFLDIACFFKGETVEYVEKTLQACGFFPKFGISVLTDRSLVSIDEYNRLRMHDLIQDMGREVVREVSPLEPGKRSRIWNHEDVIEVLTESSGTNSIQGMMADLPDQYMVHLKDDSFGKMTNLKILIVRNGHFYGSPQHLPNNLRLLDWVEYPSSSLPSTFHPKKLVVLNLSRSRFTMQEPFKHLDSLTSMDLSHCQFLTKLPDISSAPNLTELNLDYCTNLEQVHDSVGFLDKLIELRAYGCTKLKDFPQAIKLTSLQTLILNWCSSLQKFPTILERMENLTSISIEGTAIEELPPSIGNLVALQEFSMTSCLSLKELPENIDMLHNLRNLDIEGCPQLRSFLTKLRELGQSTLTFGNVQSLNLENCGLIDEDLPIIFKCFPNLSSLVLSGSNFVTLPRCIEEYYPLDFLHLDDCKQLQDIPCLPPNLQFINARNCISLTAESSNLLLSQETFEAYELQVMVPGTRVPEWFDHITKGEYMTFWVRKKFPAIILCFALAIESKMKKSFNCEIRFYINSDEVYELEIPIMYSELVTNHLWLSDLRTHSSTSLNDIESYLVDDDWNQIEISCKKVIGPSNMTISWCGVHVCKQEANMEDILFEDPYLDSDLSIETENFDLDKNNEESIENLEDYNISVCHNNMDHNQEKILLHTKTLDGVTEVSKDIVCFDGTNVVRESNMVASDYQEKSRQKSEVTNLDDEEMEAFYAILDAETSVLSLANDNKVVSESSKRIIPSEETKKALKTLEDFLTKDFSVLLRPNEYNTMESTLDYLTHLPTEDGISVEIRSLVKEVSRQFTSWSYDYTHEGKKIEVTKAKLLKSDELEEGLEANKKLFREVKYLENELCNELEYLEERKKELEEQINAVKANISASQVAKNTASNTKREIFENAKILKVQRDELREQVHCLRDEHDLAKKIQANIRDEWSKLGEKFSNIADKS 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00249 1369 Gene3D - 170 338 IPR027417 -
Trre6g00249 1369 Gene3D Ribonuclease Inhibitor 515 699 IPR032675 -
Trre6g00249 1369 PRINTS Disease resistance protein signature 613 629 - -
Trre6g00249 1369 PRINTS Disease resistance protein signature 207 222 - -
Trre6g00249 1369 PRINTS Disease resistance protein signature 284 298 - -
Trre6g00249 1369 PRINTS Disease resistance protein signature 377 391 - -
Trre6g00249 1369 SMART till_3 6 146 IPR000157 GO:0007165
Trre6g00249 1369 Pfam TIR domain 7 175 IPR000157 GO:0007165
Trre6g00249 1369 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 149 IPR035897 -
Trre6g00249 1369 SUPERFAMILY L domain-like 530 880 - -
Trre6g00249 1369 Gene3D Ribonuclease Inhibitor 700 889 IPR032675 -
Trre6g00249 1369 ProSiteProfiles TIR domain profile. 5 171 IPR000157 GO:0007165
Trre6g00249 1369 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
Trre6g00249 1369 Coils Coil 1253 1305 - -
Trre6g00249 1369 Coils Coil 1313 1347 - -
Trre6g00249 1369 Pfam NB-ARC domain 187 412 IPR002182 GO:0043531
Trre6g00249 1369 FunFam Disease resistance protein (TIR-NBS-LRR class) 3 173 - -
Trre6g00249 1369 Gene3D - 342 426 IPR042197 -
Trre6g00249 1369 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 704 IPR044974 GO:0006952
Trre6g00249 1369 Gene3D - 3 169 IPR035897 -
Trre6g00249 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00249 Trre-Chr6 1803792 1809526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00249 7 780 WRKY Transcription Factor Family AT4G12020 31.677 1.66e-96 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00249 - - ccaj:109810288 2044.63