Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00240 ATGGGCACTGAAAAAATTAGATCTTGTGCAAACTTCCTAGAGAACTCTATGCCATACTTTGCCATGATCCTTTTACAATTTGGCTATGCAGGCATGAACGTTATAGCCAAGCTCTCTCTCAATGGAGGCATGAGTCACTATGTCCTTGTTGTTTATCGTCACGCTTTTGCAACTATTGCTATAGCTCCATTTGCCATTATCTTTGAAAGGAAGGCTCAACCAAAGATTACATTTCCCATTTTCTTACAAATTTTCCTCCTAGCTCTTCTTGGGCCAGTGATAGATCAAAACTTATACTATGCTGGGTTGAAATTAACATCCCCAACCTTCTCATGTGCAATCAGCAATATGCTTCCAGCAATGACATTTGTGATTGCGGTTTTATGCCGGATGGAAAAGATCAACATGAAGAAGTTGAGATGCCAAGCAAAGGTGGTTGGAACAATGTTAACTGTGGCTGGAGCAATGTTGATGACCTTGTATAAAGGTCCTATTGTGGAGTTGTTTTGGACTAAAGATACACTTCATACCAAAAACAATACAACAAACTACACAACATCTTCAAGCAAGGATACTTGGCTCTTAGGTTCCACTTTACTAATTATTTCAACTTTGGCATGGGCATCCCTCTTTGTGTTACAAGCTAAAGCTATAGAAACATACAAGAATCATCAACTTACACTCACATCACTCATATGTTTCTTTGGCACGCTTCTAGCTTTTGCTACCACTTTAGTTATGGAACGCAAGGCTTCTGTGTGGACAATTGGTTGGGATATGAATTTATTAGCTTCTGCCTATGGGGGGATTGTTGCATCAAGTATATCATACTACGTACAAGGATTGGTAATAAAAAGGAAAGGTCCTGTTTTTGCAACTTCATTTAGCCCTTTGATGATGATCATTGTAGCAATCATGGGATCCTTCTTCCTTGCAGAGCATATTTTTCTTGGAAGTGCAATTGGTTCCATCTTGGTTGTGACAGGCTTATATTCTGTTTTGTGGGGAAAGCACAAAGAACAAGTTGAAATTAAAGTGGCGCCAGATGATCATAAACCGTTTACAAAGAGTGCTCGGTTAAATGGAAATATAGGGAAACTTTCTGAATCCTTTGATCAACTAAGTGAAGCAAAATCATTTCAGAAAGTAGAACCAAACATTTCAGTAGTTATTATTAATTGCAACATAAGTTAA 1194 0.3819 MGTEKIRSCANFLENSMPYFAMILLQFGYAGMNVIAKLSLNGGMSHYVLVVYRHAFATIAIAPFAIIFERKAQPKITFPIFLQIFLLALLGPVIDQNLYYAGLKLTSPTFSCAISNMLPAMTFVIAVLCRMEKINMKKLRCQAKVVGTMLTVAGAMLMTLYKGPIVELFWTKDTLHTKNNTTNYTTSSSKDTWLLGSTLLIISTLAWASLFVLQAKAIETYKNHQLTLTSLICFFGTLLAFATTLVMERKASVWTIGWDMNLLASAYGGIVASSISYYVQGLVIKRKGPVFATSFSPLMMIIVAIMGSFFLAEHIFLGSAIGSILVVTGLYSVLWGKHKEQVEIKVAPDDHKPFTKSARLNGNIGKLSESFDQLSEAKSFQKVEPNISVVIINCNIS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00240 397 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020
Trre6g00240 397 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020
Trre6g00240 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Trre6g00240 397 PANTHER WAT1-RELATED PROTEIN 17 347 IPR030184 GO:0016020|GO:0022857
Trre6g00240 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00240 Trre-Chr6 1742437 1747985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00240 1 369 Nodulin-like Gene Family AT5G07050 67.553 5.95e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00240 - - gmx:100799947 553.903