Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00232 ATGAAGAAGAAGCTCGATACCCGTTTTCCTGCTGCTCGGATTAAGAAGATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTTCCTGTTTTAGTTTCAAAAGCTCTGGAGTTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTACAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGTGTACAAAGCTACAATGTCTTTGACTTTTTAAGAGACATCGTCAACAGGGTGCCTGACTATAGCCACGGCCATGCCCACGCCCACGCTCACGCTCATTCTGAGCCTGGAGCTGATGATCGCGCCCTTCCAAAGAGAAGGAAAGCTGGCGGTGATGATGGTAATGACAGTGATGACGAGGCTAAGCGGAGTAAGATGCTTGAGTCAGGACACACTGGAGGTACTGGTAGGGGAAGAGGAAGAGGCAGAGGAAGAGGCCGTGGTCGAGGGGCTCGAGCCGCTGAAAGAGAAGCCTTACATCAGCAGGTTGAACCCGAACCTTGCACCTCAATGCAACAATGTAGCAAAGAAGTCTCTAATACAAGTATGGCAATAGATAATGGTCCAGAATCAAAGGAAAATAATACAGTTCATGAGGAAAGCACTCAATCTCTCCGAAACATTGATCTGAATGCCAGTATACATGAAAACGAGGACAAAAACAATACAAGCATGGCTACTACTCAGGCCTCATTGCCTGAACCTGCTGCAGCGACAGATATGCAACATGAAGAAATTCCCGGTTGGTCCCTTCCTGATGTGGACAAGATGGCGATCGACACATTACAGCTTGCCGCAAACCTTGGTAATAGGATAGAAGAGGAGGAAGATTATGATGAGGAAGGGTAA 876 0.4612 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVNRVPDYSHGHAHAHAHAHSEPGADDRALPKRRKAGGDDGNDSDDEAKRSKMLESGHTGGTGRGRGRGRGRGRGRGARAAEREALHQQVEPEPCTSMQQCSKEVSNTSMAIDNGPESKENNTVHEESTQSLRNIDLNASIHENEDKNNTSMATTQASLPEPAAATDMQHEEIPGWSLPDVDKMAIDTLQLAANLGNRIEEEEDYDEEG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00232 291 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Trre6g00232 291 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 124 - -
Trre6g00232 291 MobiDBLite consensus disorder prediction 94 212 - -
Trre6g00232 291 MobiDBLite consensus disorder prediction 174 200 - -
Trre6g00232 291 MobiDBLite consensus disorder prediction 157 171 - -
Trre6g00232 291 SUPERFAMILY Histone-fold 3 97 IPR009072 GO:0046982
Trre6g00232 291 MobiDBLite consensus disorder prediction 94 136 - -
Trre6g00232 291 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Trre6g00232 291 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00232 Trre-Chr6 1694682 1698086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00232 1 281 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.680 5.76e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre6g00232 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00232 K21752 - gmx:100810093 378.637