Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00231 ATGGCTTCTGAATCCTCTAGCATCTCTGCCACATCACAAGATCAAGGTGATTCCAACTCAAAAAAAGTGGTCACGAAGGAGATCGAACAAGATCAATCATCAAACTCAAATTCAAAAAACCCTGTTGATTTCGTGAAGCTATTGAAAGACGATTCAGTTCCTATGTCGAATGTGCAAGAGCACAATTTCTTTAGTCCTATTCAAGTTGGTTCGTCATCTCGTTTTCCTATTAACAACAATGAAACGAAATATGAGAACGAGAATGGAGAGAAAAGTTTGGATTCAAGATCTTTTTTGTGCTCTTTTTGCAAGAGACAATTTTCTACTTCACAAGCGTTAGGAGGACACCAGAACGCTCATAAGGCGGAACGTGCCTTAGAAAAACAACGTAAACAAAGGGCACTCGGGACTAGAATGGAGTCCATGATTCAAAAACCACATCCTAGGTTTACCCCACATAGTATTGGGTATAGTCATGGTGCTTTGTGTTTGCAAGAGATATTAAACCCTTCTCTTGTGTCATTGAGAAATATGGGGAGTGGTAATAGCGGAATTGGAAATCTAAGCATTGGTGGTGCATCTACTTTAAAGATTGAAGATGGTTCAAAAAATAAATTAAAAATTGAAGATGGTTCAAAAAATAAAATTAGTGATATCCTAAAATTTGGAGAGTCTTCTACAAATATTGCTACAAGTTCAAACTTAAATATAGAGAAGAAAAATATTGTGGCTCTTACTTCTACTAAGGATGATATTCATCATCATCGATCAAAGTCCAACATTGAAGAAGAAACCTCCAATAATTCTGATGAATCATCTGGACTTGATTTGTCACTTAAGCTTTAA 846 0.3617 MASESSSISATSQDQGDSNSKKVVTKEIEQDQSSNSNSKNPVDFVKLLKDDSVPMSNVQEHNFFSPIQVGSSSRFPINNNETKYENENGEKSLDSRSFLCSFCKRQFSTSQALGGHQNAHKAERALEKQRKQRALGTRMESMIQKPHPRFTPHSIGYSHGALCLQEILNPSLVSLRNMGSGNSGIGNLSIGGASTLKIEDGSKNKLKIEDGSKNKISDILKFGESSTNIATSSNLNIEKKNIVALTSTKDDIHHHRSKSNIEEETSNNSDESSGLDLSLKL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00231 281 MobiDBLite consensus disorder prediction 1 42 - -
Trre6g00231 281 SUPERFAMILY beta-beta-alpha zinc fingers 95 126 IPR036236 -
Trre6g00231 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Trre6g00231 281 Gene3D Classic Zinc Finger 78 148 - -
Trre6g00231 281 Pfam C2H2-type zinc finger 98 122 - -
Trre6g00231 281 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 281 IPR044246 GO:0009788
Trre6g00231 281 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Trre6g00231 281 MobiDBLite consensus disorder prediction 1 19 - -
Trre6g00231 281 MobiDBLite consensus disorder prediction 251 265 - -
Trre6g00231 281 MobiDBLite consensus disorder prediction 251 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00231 Trre-Chr6 1691080 1692015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00231 74 132 C2H2 Transcription Factor Family AT5G01860 54.237 1.47e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00231 - - tpra:123915384 429.869