LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00227	ATGCTCTATCTATGGTTACTTGCCATCAAATTGATATGCTTTTTCCCTTTTGCTTACACAGAATCACTTGATTATAGATATGCTTGTGTAGACCAATCTTCTGTTCCTCTCTCAAGCACATACAAAACCAACCTCAACAATTTGCTCTCAGAACTTACATCAGATTCTGCTGTCAGCAATGGTTTTGGTAAAAGAATTTCAGGTAATGATCAAAACAATATGGTTTATGGACTATACTTCTGTCGTGGGGATGCGAACGTAACCCTTTGCAATTCATGCATTCAATATTCTAGCAAATTGATAAAGCAGGTATGCCCTAATAATGCATCAGCTATTTTTTGGTGTCCCTTTTGTCTTCTGAGGTACTCAAACAAGAATTTCTTTGGCAAATTAGCTGTAAGACCGAGGATTCCTATGTTTGATGCAACGCAGAATTTTACTAGTGTTGGTGAATTTGATAGTGATGCAAGGATTTTGATGAATGGTTTGATACAAATGGGATCACATACACCTTTAATGTTTGGTACACATATGTTTAACATAAATGGTACTCAAAGAAGGTATGGTTGGGTGCAATGCAACAGAGATATTACTAGTGAGGAATGTAGAACTTGTTTGAGTAATATGCTTGAGGATGTTGAAAATTGTTGTATGGAGAAAAGAGTGTGGCGTATATTTTCGCCGAGTTGTGTTATTATGTATGAAACTCAGCCATTCCTTTTGAAGAATATACAAAATGACGCATCAGCGCATCAGAAAGCCAAAGAAAAGGGAGAAACAGGGCCACTTTTTATTCTAGTAATAATCATTGTTGTAACCGCAACGGTGGCGGTAGCATTACTGCCTTTCAGCACATACTACTACAGGCGCTTGGAACTGAAAAAAGATGAAAAAGAGATGCAAATCCTTGAAGCAATGTTTTCTCAAGATCAGAGTAACAATGAGGAGAATGTGAATACTGACCTACCTATGATGCCTCTAAGTACTATTCTAAAAAGTACTAATAATTTTTCTGATAATTATAAATTGGGGGAAGGTGGATTTGGAACTGTCTACAAGGGTGTTTTATCAGATGGAAGGGAAATTGCTGTTAAAAGACTTTCGAAAACTTCGGTTCAAGGTGTGGAGGAATTCAAGAATGAAGTAATGTTGATTGCCAAATTGCAGCATCGAAACCTTGTCAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCAAGCCTTGATTTCCAGCTACGTGATACTGTAAAGGGTGCGCAGTTGGACTGGAAACAACGACTAAACATTATTAATGGAATTGCTAAAGGGCTTCTGTATCTTCATGAGGACTCTAGACTCAGGGTTATTCATAGAGACTTGAAAGCTAGCAATATACTGTTAGATCATGAAATGAATCCAAAAATCTCAGACTTTGGACTAGCAAGATCATTTGGAGGAGACCAGGGGGAAGCAAATACAATTAGAGTTGTCGGAACTTATGGATACATGGCTCCTGAATATGTTATCGAAGGCATGTTTTCAATAAAATCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTGGAGATCATCAGTGGAAAAAGGAACAACAAAAAATTCTACCTTTCAGAGCATGGCCAAAGCCTTCTCACATATGCATGGAACTTCTGGAGTGAAGGAAAAGTTTTAGAATTGGTGGATCCGTTGATAGAAAACTCATATGTGCCTAGTGAAGTTTTGAAGTGTATACAGATTGGCCTATTGTGTGTACAAGATAATGCAGCTGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGGAAGTGACAACGTGGCTCTTCCCAGCCCTATAAGTCCATCTTTTTCTGTTGGAAGGGCTACAAATACAATTGAAAGAGGGACTTCATCAAATGCTTCTACCTCTGTCACTGTCAATGAAATAACCCTATCTGAAGTAATGCCTAGATGA	1977	0.3784	MLYLWLLAIKLICFFPFAYTESLDYRYACVDQSSVPLSSTYKTNLNNLLSELTSDSAVSNGFGKRISGNDQNNMVYGLYFCRGDANVTLCNSCIQYSSKLIKQVCPNNASAIFWCPFCLLRYSNKNFFGKLAVRPRIPMFDATQNFTSVGEFDSDARILMNGLIQMGSHTPLMFGTHMFNINGTQRRYGWVQCNRDITSEECRTCLSNMLEDVENCCMEKRVWRIFSPSCVIMYETQPFLLKNIQNDASAHQKAKEKGETGPLFILVIIIVVTATVAVALLPFSTYYYRRLELKKDEKEMQILEAMFSQDQSNNEENVNTDLPMMPLSTILKSTNNFSDNYKLGEGGFGTVYKGVLSDGREIAVKRLSKTSVQGVEEFKNEVMLIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFQLRDTVKGAQLDWKQRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARSFGGDQGEANTIRVVGTYGYMAPEYVIEGMFSIKSDVFSFGVLLLEIISGKRNNKKFYLSEHGQSLLTYAWNFWSEGKVLELVDPLIENSYVPSEVLKCIQIGLLCVQDNAADRPTMSSVVHMLGSDNVALPSPISPSFSVGRATNTIERGTSSNASTSVTVNEITLSEVMPR	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00227	658	ProSiteProfiles	Protein kinase domain profile.	337	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00227	658	ProSitePatterns	Protein kinases ATP-binding region signature.	343	365	IPR017441	GO:0005524
	Trre6g00227	658	ProSiteProfiles	Gnk2-homologous domain profile.	134	239	IPR002902	-
	Trre6g00227	658	Gene3D	Transferase(Phosphotransferase) domain 1	413	615	-	-
	Trre6g00227	658	Pfam	Protein tyrosine and serine/threonine kinase	341	609	IPR001245	GO:0004672\|GO:0006468
	Trre6g00227	658	SMART	serkin_6	337	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00227	658	Pfam	Salt stress response/antifungal	36	124	IPR002902	-
	Trre6g00227	658	Pfam	Salt stress response/antifungal	144	236	IPR002902	-
	Trre6g00227	658	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	413	617	-	-
	Trre6g00227	658	ProSiteProfiles	Gnk2-homologous domain profile.	23	127	IPR002902	-
	Trre6g00227	658	SUPERFAMILY	Protein kinase-like (PK-like)	320	626	IPR011009	-
	Trre6g00227	658	Gene3D	-	23	127	IPR038408	-
	Trre6g00227	658	Gene3D	-	138	239	IPR038408	-
	Trre6g00227	658	FunFam	Cysteine-rich receptor-like protein kinase 10	137	239	-	-
	Trre6g00227	658	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	301	412	-	-
	Trre6g00227	658	CDD	STKc_IRAK	343	609	-	-
	Trre6g00227	658	Gene3D	Phosphorylase Kinase; domain 1	298	412	-	-
	Trre6g00227	658	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	39	653	-	-
	Trre6g00227	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00227	Trre-Chr6	1676280	1680835	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00227	27	658	Receptor kinase-like Gene Family	AT4G05200	39.177	1.61e-160	476

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre6g00227		PK_Tyr_Ser-Thr	3e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g00227	-		-	gmx:100798691	938.717