LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00225	ATGTCTTTATTATCATCAGATTCTGCTACAAGCAATGGTTTTGGAAATAGAACTTCAGGTAGTGATCAAACCAATAAGGTTTATGGACTCTATCTTTGTCGTGGCGATGCTAATACAAGTCTTTGTCATTCATGTGTTCAAAACTCTAGCAGATTGCTCAAACAACACTGTCCTAATAATGCTTCAGCAGTTTTGTGGTATCCCTTTTGTCTTTTGAGGTACTCAAACAATAATTTCTTTGGTAACCTTACTTTAAGACCAAGGATTCCTATGTTTGATGCAAAACAGAATTTGACTAGTGCTGGTGAATTTGATAGTGATGCTAGACTTTTGATGAATGGTTTAATACAAATGGGATCACAGACAGATTTAATGTTTGGAACACATATGTTTAACATAAATGGTACTCAAAGTAGGTATGGTTGGGTGCAATGCAGCAGAGATATTACTAGCGAGGAATGCAGAACTTGTTTGAGTAACTTGCTTGAGGATGTTCAAAATTGTTGTATGGAGAAGAAAGTGTGGAGAATCTTTTCTCCAAGTTGTATTATGATGTATGAAACTCAGCCATTCTTTGTGAATGGTACAATTTCTGAGCAAGCCAAAGAAAAGGATGACTCAAGGTCATGGATTATCATAATCATTGTTGTAATTGGAATAGTAGTCGCAGCCATGGTGGCTTTCAGCGCATACTATTTCTGGTGCTTGAAACGTAAAAAAGAGAGAAATGCTATGCAAGTCCTTAGTCCAATGTTTTCTCAAGATCAGTCTGACATTGAGGAGACTGGAAATACTGACCTGCCTATGATGCCTCTGAGTACCATTCTAAAGAGTACTAACAATTTTTCTGATGAATATAAATTGGGGAAAGGTGGATTTGGAACTGTATACAAGGGTGTTTTAGCAGATGGAAGGGAAATTGCTGTGAAAAGGCTTTCAAAAACTTCAGCTCAAGGTGTGGAGGAATTAAAAAATGAAATAATATTGATTGCCAAATTGCAGCATAGAAACCTTGTCAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATATTTGCCTAATTCAAGCCTTGATTTCCACCTATTTGATATGGCAAAGAGTGCAAAACTAGATTGGAAACAGCGATTAAATATTATTAATGGGATTGCTAAAGGGATTCTATATCTTCACGAGGACTCTAGGCTCAGAGTTATTCACAGAGATTTGAAAGCTAGCAATATACTGTTAGATCATGAAATGAATCCAAAAGTATCAGACTTTGGACTGGCAAGAGCATTTGGAGGAGATCAGGATGAAGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTATTTTCGGTGAAGTCAGATGTTTTCAGCTTTGGCGTTCTTTTGCTAGAGATCATAAGTGGAAGAAAAAACAGCAAATTCTATCTTTCGGAGCCTGGACAAAGCCTTCCCATATATGCATGGAACCTTTGGTGCAAAAGAAAAGGTTTGGACTTGATGGATCCATTGATAGAAAAGTCATGTGTACCTAGTGAATATCTGAAGTGTTTACATATTGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGCAAGTGACACAATGACTCTTACCAGCCCTACACGCCCTGCATTTTCTGTTGGAAGAGATGACGTCAGACGAGCTGTTGTTGAGCAAGAGTCTTCACCAAACACTTCTATCTCTTGCAATGAAGTAACCTTGTCTGAATTGAGGCCTAGATGA	1812	0.3775	MSLLSSDSATSNGFGNRTSGSDQTNKVYGLYLCRGDANTSLCHSCVQNSSRLLKQHCPNNASAVLWYPFCLLRYSNNNFFGNLTLRPRIPMFDAKQNLTSAGEFDSDARLLMNGLIQMGSQTDLMFGTHMFNINGTQSRYGWVQCSRDITSEECRTCLSNLLEDVQNCCMEKKVWRIFSPSCIMMYETQPFFVNGTISEQAKEKDDSRSWIIIIIVVIGIVVAAMVAFSAYYFWCLKRKKERNAMQVLSPMFSQDQSDIEETGNTDLPMMPLSTILKSTNNFSDEYKLGKGGFGTVYKGVLADGREIAVKRLSKTSAQGVEELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMAKSAKLDWKQRLNIINGIAKGILYLHEDSRLRVIHRDLKASNILLDHEMNPKVSDFGLARAFGGDQDEANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGRKNSKFYLSEPGQSLPIYAWNLWCKRKGLDLMDPLIEKSCVPSEYLKCLHIGLLCVQEDAADRPTMSSVVHMLASDTMTLTSPTRPAFSVGRDDVRRAVVEQESSPNTSISCNEVTLSELRPR	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00225	603	CDD	STKc_IRAK	288	553	-	-
	Trre6g00225	603	FunFam	Liguleless narrow1	358	561	-	-
	Trre6g00225	603	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	248	357	-	-
	Trre6g00225	603	Gene3D	-	90	191	IPR038408	-
	Trre6g00225	603	Gene3D	-	1	79	IPR038408	-
	Trre6g00225	603	SUPERFAMILY	Protein kinase-like (PK-like)	265	553	IPR011009	-
	Trre6g00225	603	Gene3D	Transferase(Phosphotransferase) domain 1	358	564	-	-
	Trre6g00225	603	SMART	serkin_6	282	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00225	603	ProSiteProfiles	Gnk2-homologous domain profile.	1	79	IPR002902	-
	Trre6g00225	603	Gene3D	Phosphorylase Kinase; domain 1	243	357	-	-
	Trre6g00225	603	ProSiteProfiles	Gnk2-homologous domain profile.	86	191	IPR002902	-
	Trre6g00225	603	FunFam	Cysteine-rich receptor-like protein kinase 10	89	191	-	-
	Trre6g00225	603	Pfam	Salt stress response/antifungal	10	76	IPR002902	-
	Trre6g00225	603	Pfam	Salt stress response/antifungal	96	188	IPR002902	-
	Trre6g00225	603	ProSitePatterns	Protein kinases ATP-binding region signature.	288	310	IPR017441	GO:0005524
	Trre6g00225	603	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	23	601	-	-
	Trre6g00225	603	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	403	415	IPR008271	GO:0004672\|GO:0006468
	Trre6g00225	603	ProSiteProfiles	Protein kinase domain profile.	282	554	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00225	603	Pfam	Protein tyrosine and serine/threonine kinase	286	553	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00225	Trre-Chr6	1663937	1667414	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00225	2	568	Receptor kinase-like Gene Family	AT4G05200	42.159	5.44e-165	485

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre6g00225		PK_Tyr_Ser-Thr	1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g00225	-		-	gmx:100798691	978.393