Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00223 ATGGCAACAAAACTCAAACTCATAATTTCCATCCTTAGATTTCTTAGCTTCATGATCCTTTTAACAAAATCGATCGCACAATCTCCAAACTATGTAGGTGATGATTGTAAAAACTCAACAGAACAATCTCTTACATCTACATACAAATCAAACCTTAACAAAGTTCTCTCATTGCTTTCCTCTGATGCTATTGTAAGCAAAGGATATAATCACACAAACATAGGTGACAACACAGTTGATGGTGTCTATGGTCTCTATGATTGTAGGGGTGATGTTGTAGGTTCATTTTGTCAATTTTGTGTCTCTACCGCTGCCTCAGATATTCTTCAACGCTGTCCTAATAGAGCCTCAGCTACTATATGGTACAACTTTTGTATTCTCAGATATTCCAATCATAATTTCTCTGGAAAGCTAACAACAGATCCATCATGGAACAAATCTGGGTCAGAAAAGATCAATAATCCACAAGAACTTGAGAAAGCTGAGGATAATATGCAAAGTTTGATCAAAGAAGCTACTTTGGATACCAAAAAATTATTTGCAATGAGTGAGTTCAATTTGAGTAGCAATAAGAAAAGATATGGATTGGTGCAGTGTAGTAGGGACCTTAATGACAAGCAATGTAATCAATGTTTGGAGGCCATGTTGGACAAAGTTCCTAAATGCTGTGCTACAAAGATTAGTTGGCAAGTTCTTGCTCCAAGTTGTTTGATAAAATATGATAATGTTATGTTTTATCAACTTATTTCTCAAACATCAACTCCTTTGCCAGCCGGGCAAGGAGGTTCAAATAAATCAAATTATACCTTGATCATCACCATAGTCATTGTGTTGGTGGTGGCAGTTGCTCTCATGAGTTGTTGTATATACTTCATACGGAGGCGTAATCATTCAAATAGAGATGGACTACAATCAGAGACAATTCCTATCTCTCTTAATGATCGTAAAGAAAACGATTCATTAAATCCCGACCTCCCAATAATCCCTTTAACTTGGATTAGACAAAGTACTAATAACTTTTCTGAGTTAAGTAAACTAGGAGAAGGTGGATTTGGCCCTGTTTATAAGGGAAATTTAGTAGATGGAACAGAAGTTGCAATCAAAAGGCTATCTATAACATCTGGTCAAGGTTCACAAGAGTTCCAAAATGAAGTGATCTTTATAGCTAAATTGCAACATAGAAACCTTGTGAGACTTTTGGGTTGCTGCATTGAGGATAATGAAAAGTTGCTTGTATATGAATACATGCCAAACTCTAGCCTTGACTTTCATCTATTTGGTACTGATGATGAAAAAAGAAAACTTCTAGATTGGAAGTTGAGATTGAACATTATTAATGGAATTGCTAAAGGACTATTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACTTAAAAGCTAGTAATGTTCTGCTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGACCAATGTCAAGAAAATACAAAAAGAGTTGTGGGCACATATGGATACATGTCTCCAGAGTATGCTATGGAGGGATTATATTCGGTGAAGTCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAGATAATTTGTGGAAAAAAAATTAGAAATTTCAATCTTGAAGAACACGGTCAAAGTCTTCTTGTATATAGTTGGAATCTTTGGTATGAAGGAAAAAGTTTGGAGCTTTTAGATCCAATATTGAAGAAGACATACATAGCAAATGAAGTTGTGAGGTGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCAAATGTTGTTGTCATGCTTGCAAGTGATACAATGGCACTTCCCAATCCTAATGATCCTGCATTTTCAGTTGGTAGAAAACTCAAGGAAGAAGAATCAACTTCAAAAGCTTCCAATGATCCTTCTGTTAATGAAGTTACAATATCAAATGTTTTCCCTAGGTAG 1983 0.3545 MATKLKLIISILRFLSFMILLTKSIAQSPNYVGDDCKNSTEQSLTSTYKSNLNKVLSLLSSDAIVSKGYNHTNIGDNTVDGVYGLYDCRGDVVGSFCQFCVSTAASDILQRCPNRASATIWYNFCILRYSNHNFSGKLTTDPSWNKSGSEKINNPQELEKAEDNMQSLIKEATLDTKKLFAMSEFNLSSNKKRYGLVQCSRDLNDKQCNQCLEAMLDKVPKCCATKISWQVLAPSCLIKYDNVMFYQLISQTSTPLPAGQGGSNKSNYTLIITIVIVLVVAVALMSCCIYFIRRRNHSNRDGLQSETIPISLNDRKENDSLNPDLPIIPLTWIRQSTNNFSELSKLGEGGFGPVYKGNLVDGTEVAIKRLSITSGQGSQEFQNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLDFHLFGTDDEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARAFEKDQCQENTKRVVGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIICGKKIRNFNLEEHGQSLLVYSWNLWYEGKSLELLDPILKKTYIANEVVRCIHIGLLCVQEDAIDRPTMSNVVVMLASDTMALPNPNDPAFSVGRKLKEEESTSKASNDPSVNEVTISNVFPR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00223 660 Gene3D Transferase(Phosphotransferase) domain 1 416 622 - -
Trre6g00223 660 CDD STKc_IRAK 346 613 - -
Trre6g00223 660 FunFam Cysteine-rich receptor-like protein kinase 28 32 133 - -
Trre6g00223 660 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 656 - -
Trre6g00223 660 SMART serkin_6 340 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00223 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 305 415 - -
Trre6g00223 660 Pfam Domain of unknown function (DUF3403) 615 660 IPR021820 GO:0004674
Trre6g00223 660 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Trre6g00223 660 Pfam Salt stress response/antifungal 162 242 IPR002902 -
Trre6g00223 660 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Trre6g00223 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Trre6g00223 660 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Trre6g00223 660 Pfam Protein tyrosine and serine/threonine kinase 344 610 IPR001245 GO:0004672|GO:0006468
Trre6g00223 660 Gene3D - 30 134 IPR038408 -
Trre6g00223 660 Gene3D - 143 245 IPR038408 -
Trre6g00223 660 Gene3D Phosphorylase Kinase; domain 1 306 415 - -
Trre6g00223 660 Coils Coil 158 178 - -
Trre6g00223 660 SUPERFAMILY Protein kinase-like (PK-like) 323 628 IPR011009 -
Trre6g00223 660 FunFam Liguleless narrow1 416 621 - -
Trre6g00223 660 MobiDBLite consensus disorder prediction 643 660 - -
Trre6g00223 660 ProSiteProfiles Protein kinase domain profile. 340 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00223 660 MobiDBLite consensus disorder prediction 632 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00223 Trre-Chr6 1654763 1662521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00223 1 660 Receptor kinase-like Gene Family AT4G05200 42.836 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g00223 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00223 - - mtr:25490357 956.436