Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00222 ATGACCCTTTTCACAAAATCAATTGCACAATCTCCAAACTATGTAGGTGATGATTGTAAAAACTCAACAGAACAATCTCTTACATCTACATACAAATCAAACCTTAACAAACTCCTCTCATTACTTTCCTCTGATGCTATTGTAAGCAAAGGATATAATCACACAAGCATAGGTGACAACACGGTTGATGGTGTATATGGTCTCTATGATTGTAGGGGTGATGTTGTAGGTTCATTTTGTCAATTTTGTGTCTCTACTGCTGCCTCGGATATTCTTCAACACTGTCCTAATAGAGCCTCAGCTACTATATGGTACAACTTTTGCATTCTCAGATACTCCAATCATAATTTCTTTGGAAAGCTAACAACAGATCCATCATGGAACAAATCTGGGTCAGAAAAGATCAATAATCCACAAGAACTTGAGAAAGCCGAGGATAATATGCAAAGTTTGATCAAAGAAGCTACTTTGGATACCAAAAAATTATTTGCAATGAGTGAGTTCAATTTGAGTAGCAATAAGAAAAGATATGGATTGGTGCAGTGTAGTAGGGACCTTAATGACAAGCAATGTAATCAATGTTTGGAGGACATGTTAGACAAAGTTCCTAAATGTTGTGGTACAAAGATTGGTTGGCAAGTTGTTGCTCCAAGTTGTTTGTTAAAATATGATGATGTTATGTTTTATCAACTTATTTCTCAAACTTCTACTCCTTTGCCAGCCGGGCAAGGAGGTTCAAATAAATCAAATACTTTGATCATCACCATAGTCATTGTGTTGGTGGTTGCAGTTGTTCTCATGAGTTGTTGTATCTACTTCATATGTAGGCGTAATCGTTCAAATAAAGATGAACTACAATCAGAGACAATTCCAATATCTCTTCATGATCGTAAAGAAAACGATTCATTAAATCATGAACTTCCAATAATCCCTTTAACTTGGATTAGACGGAGTACTAATAACTTTTCCGAGTTATGTAAACTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGCAATTTAGTAGATGGAACAGAAGTTGCAATCAAAAGGCTATCAATAACATCTGGCCAAGGTTCACAAGAGTTCAAGAATGAAGTGATTTTTATAGCTAAATTGCAACATAGAAACCTTGTGAGACTTTTGGGTTGCTGCATTGAGGATAATGAAAAGTTGCTTGTATATGAGTACATGCCAAACTCTAGTCTTGACTTTCATCTATTTGGTACTGATGATGAAAAAAGAAAACTTCTAGATTGGAAGTTAAGATTGAACATTATTAATGGAATTGCAAAAGGACTCTTGTACCTTCACGAAGACTCAAGACTTAGAGTAATCCATAGAGACTTAAAAGCTAGTAATGTTCTGCTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGATCAATGCCAAGAAAATACAAGAAGAGTTGTGGGCACATATGGATACATGTCTCCAGAGTATGCTATGGAGGGGTTATATTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTTTTATTAGAGATAATTTGTGGAAAAAGAAATAGTGGATTCTATCTCGGAGAACACGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTATGAAGGAAAAAGTTTGGAGCTTTTAGATCCAATATTGAAGAAGACATACATAGCCAATGAAGTTGTGAGATGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCAAATGTTGTTGTCATGCTTGCAAGTGATACAATGGCACTTCCCAATCCTAATAATCCTGCATTTTCAGTTGGAAGAAAATTCAAGGAAGATGAATCAACTTCAAAAACTTCCAATGATCCTTCTGTTAATGAAGTTACAATATCAAATATTTTCCCTAGGTAG 1929 0.3541 MTLFTKSIAQSPNYVGDDCKNSTEQSLTSTYKSNLNKLLSLLSSDAIVSKGYNHTSIGDNTVDGVYGLYDCRGDVVGSFCQFCVSTAASDILQHCPNRASATIWYNFCILRYSNHNFFGKLTTDPSWNKSGSEKINNPQELEKAEDNMQSLIKEATLDTKKLFAMSEFNLSSNKKRYGLVQCSRDLNDKQCNQCLEDMLDKVPKCCGTKIGWQVVAPSCLLKYDDVMFYQLISQTSTPLPAGQGGSNKSNTLIITIVIVLVVAVVLMSCCIYFICRRNRSNKDELQSETIPISLHDRKENDSLNHELPIIPLTWIRRSTNNFSELCKLGEGGFGPVYKGNLVDGTEVAIKRLSITSGQGSQEFKNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLDFHLFGTDDEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARAFEKDQCQENTRRVVGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNSGFYLGEHGQSLLIYSWNLWYEGKSLELLDPILKKTYIANEVVRCIHIGLLCVQEDAIDRPTMSNVVVMLASDTMALPNPNNPAFSVGRKFKEDESTSKTSNDPSVNEVTISNIFPR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00222 642 Coils Coil 141 161 - -
Trre6g00222 642 ProSiteProfiles Protein kinase domain profile. 322 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00222 642 Gene3D Phosphorylase Kinase; domain 1 286 397 - -
Trre6g00222 642 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 638 - -
Trre6g00222 642 ProSiteProfiles Gnk2-homologous domain profile. 13 117 IPR002902 -
Trre6g00222 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Trre6g00222 642 Pfam Domain of unknown function (DUF3403) 597 642 IPR021820 GO:0004674
Trre6g00222 642 ProSiteProfiles Gnk2-homologous domain profile. 123 228 IPR002902 -
Trre6g00222 642 SUPERFAMILY Protein kinase-like (PK-like) 305 616 IPR011009 -
Trre6g00222 642 Gene3D Transferase(Phosphotransferase) domain 1 398 604 - -
Trre6g00222 642 Pfam Salt stress response/antifungal 145 225 IPR002902 -
Trre6g00222 642 Pfam Salt stress response/antifungal 19 114 IPR002902 -
Trre6g00222 642 Pfam Protein tyrosine and serine/threonine kinase 326 593 IPR001245 GO:0004672|GO:0006468
Trre6g00222 642 FunFam Cysteine-rich receptor-like protein kinase 28 15 116 - -
Trre6g00222 642 SMART serkin_6 322 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00222 642 Gene3D - 126 228 IPR038408 -
Trre6g00222 642 Gene3D - 13 117 IPR038408 -
Trre6g00222 642 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 287 397 - -
Trre6g00222 642 CDD STKc_IRAK 328 595 - -
Trre6g00222 642 FunFam Liguleless narrow1 398 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00222 Trre-Chr6 1639976 1647195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00222 3 642 Receptor kinase-like Gene Family AT4G05200 43.582 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g00222 PK_Tyr_Ser-Thr 8.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00222 - - mtr:25490357 976.081