Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00221 ATGACAACAAAACTCAAACTCATAATTTCCATCCTTAGATTTCTTAGCTTAATGACCCTTTTCACAAAATCAATTGCACAATCTCCAAACTATGTAGGTGATGATTGTAAAAACTCAACAGAACAATCTCTTACATCTACATACAAATCAAACCTTAACAAACTCCTCTCATTACTTTCCTCTGATGCTATTGTAAGCAAAGGATATAATCACACAAGCATAGGTGACAACACGGTTGATGGTGTATATGGTCTCTATGATTGTAGGGGTGATGTTGTAGGTTCATTTTGTCAATTTTGTGTCTCTACTGCTGCCTCGGATATTCTTCAACACTGTCCTAATAGAGCCTCAGCTACTATATGGTACAACTTTTGCATTCTCAGATACTCCAATCATAATTTCTTTGGAAAGCTAACAACAGATCCATCATGGAACAAATCTGGGTCAGAAAAGATCAATAATCCACAAGAACTTGAGAAAGCCGAGGATAATATGCAAAGTTTGATCAAAGAAGCTACTTTGGATACCAAAAAATTATTTGCAATGAGTGAGTTCAATTTGAGTAGCAATAAGAAAAGATATGGATTGGTGCAGTGTAGTAGGGACCTTAATGACAAGCAATGTAATCAATGTTTGGAGGACATGTTAGACAAAGTTCCTAAATGTTGTGGTACAAAGATTGGTTGGCAAGTTGTTGCTCCAAGTTGTTTGTTAAAATATGATGATGTTATGTTTTATCAACTTATTTCTCAAACTTCTACTCCTTTGCCAGCCGGGCAAGGAGGTTCAAATAAATCAAATACTTTGATCATCACCATAGTCATTGTGTTGGTGGTTGCAGTTGTTCTCATGAGTTGTTGTATCTACTTCATATGTAGGCGTAATCGTTCAAATAAAGATGAACTACAATCAGAGACAATTCCAATATCTCTTCATGATCGTAAAGAAAACGATTCATTAAATCATGAACTTCCAATAATCCCTTTAACTTGGATTAGACGGAGTACTAATAACTTTTCCGAGTTATGTAAACTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGCAATTTAGTAGATGGAACAGAAGTTGCAATCAAAAGGCTATCAATAACATCTGGCCAAGGTTCACAAGAGTTCAAGAATGAAGTGATTTTTATAGCTAAATTGCAACATAGAAACCTTGTGAGACTTTTGGGTTGCTGCATTGAGGATAATGAAAAGTTGCTTGTATATGAGTACATGCCAAACTCTAGTCTTGACTTTCATCTATTTGATGATGAAAAAAGAAAACTTCTAGATTGGAAGTTAAGATTGAACATTATTAATGGAATTGCAAAAGGACTCTTGTACCTTCACGAAGACTCAAGACTTAGAGTAATCCATAGAGACTTAAAAGCTAGTAATGTTCTGCTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGATCAATGCCAAGAAAATACAAGAAGAGTTGTGGGCACATATGGATACATGTCTCCAGAGTATGCTATGGAGGGGTTATATTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTTTTATTAGAGATAATTTGTGGAAAAAGAAATAGTGGATTCTATCTCGGAGAACACGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTATGAAGGAAAAAGTTTGGAGCTTTTAGATCCAATATTGAAGAAGACATACATAGCCAATGAAGTTGTGAGATGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCAAATGTTGTTGTCATGCTTGCAAGTGATACAATGGCACTTCCCAATCCTAATAATCCTGCATTTTCAGTTGGAAGAAAATTCAAGGAAGATGAATCAACTTCAAAAACTTCCAATGATCCTTCTGTTAATGAAGTTACAATATCAAATATTTTCCCTAGGTAG 1974 0.3521 MTTKLKLIISILRFLSLMTLFTKSIAQSPNYVGDDCKNSTEQSLTSTYKSNLNKLLSLLSSDAIVSKGYNHTSIGDNTVDGVYGLYDCRGDVVGSFCQFCVSTAASDILQHCPNRASATIWYNFCILRYSNHNFFGKLTTDPSWNKSGSEKINNPQELEKAEDNMQSLIKEATLDTKKLFAMSEFNLSSNKKRYGLVQCSRDLNDKQCNQCLEDMLDKVPKCCGTKIGWQVVAPSCLLKYDDVMFYQLISQTSTPLPAGQGGSNKSNTLIITIVIVLVVAVVLMSCCIYFICRRNRSNKDELQSETIPISLHDRKENDSLNHELPIIPLTWIRRSTNNFSELCKLGEGGFGPVYKGNLVDGTEVAIKRLSITSGQGSQEFKNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLDFHLFDDEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARAFEKDQCQENTRRVVGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNSGFYLGEHGQSLLIYSWNLWYEGKSLELLDPILKKTYIANEVVRCIHIGLLCVQEDAIDRPTMSNVVVMLASDTMALPNPNNPAFSVGRKFKEDESTSKTSNDPSVNEVTISNIFPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00221 657 SUPERFAMILY Protein kinase-like (PK-like) 322 631 IPR011009 -
Trre6g00221 657 Pfam Protein tyrosine and serine/threonine kinase 343 608 IPR001245 GO:0004672|GO:0006468
Trre6g00221 657 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 46 653 - -
Trre6g00221 657 FunFam Liguleless narrow1 415 618 - -
Trre6g00221 657 Pfam Salt stress response/antifungal 162 242 IPR002902 -
Trre6g00221 657 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Trre6g00221 657 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 304 414 - -
Trre6g00221 657 Pfam Domain of unknown function (DUF3403) 612 657 IPR021820 GO:0004674
Trre6g00221 657 CDD STKc_IRAK 345 610 - -
Trre6g00221 657 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Trre6g00221 657 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00221 657 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Trre6g00221 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Trre6g00221 657 FunFam Cysteine-rich receptor-like protein kinase 28 32 133 - -
Trre6g00221 657 Gene3D Phosphorylase Kinase; domain 1 303 414 - -
Trre6g00221 657 Gene3D - 30 134 IPR038408 -
Trre6g00221 657 Gene3D - 143 245 IPR038408 -
Trre6g00221 657 Gene3D Transferase(Phosphotransferase) domain 1 415 619 - -
Trre6g00221 657 Coils Coil 158 178 - -
Trre6g00221 657 SMART serkin_6 339 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00221 Trre-Chr6 1639925 1647195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00221 1 657 Receptor kinase-like Gene Family AT4G05200 43.231 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g00221 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00221 - - mtr:25490357 981.089