Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00217 ATGGGGAAGCTTATGAATATGATAACAACCGATGCCAATGCATTACAGCAAATATGTGAACAACTTCATGGACTATGGTCAGCACCATTTCAAATCATCATAGCTATGGTTCTTCTATACCAGCAACTAGGTGTTGCTTCACTTGTTGGATCACTAATACTAGTTCTCATTATTCCACTACAGGCATTTATGAATGACAAAATGAGAAAACTGACAAAGGAAGGACTGCAACAGACGGACAAAAGGGTTGGTCTGATGAACGAAATTCTTTCTGCCATGGATACAGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAATTCAAAGCATTCGACATGAAGAACTATCATGGTTCCGCAAATCACAGCTTCTATATGCTCTAAACAGATTTATGCTGAACAGCATCCCAGTTCTTGTGACAGTAACTTCCTTTGGAATGTTTACTTTACTTGGTGGAGAATTGACACCTGCAAGGGCATTCACCTCACTATCGCTGTTTTCGGTTTTGCGCTTTCCTTTAAATATGCTTCCAAAGTTACTAAGTCAGGTAGCAAATGCGAATGTCTCCTTGCAACGTTTGGAGGTACTGTTTTCGGCTGAGGAACGAAATTTACAACAAAATCCACCTATTGTTTCAGGACTTCCAGCCATATCAATAAAAAATGGTGATTTTTCATGGGATCCTAAGGCAGAGAAGGCTACATTGTCAAATATCAATTTTGAAATACCAGTTGGAAGCTTAGTTGCAATTATTGGAGGTACCGGAGAAGGGAAAACATCACTTATATCAGCAATGCTTGGAGAGCTACCTCTTGTATCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACACTTCGCGAAAATATACTATTTGGATCAAAGTTCGATCATGGACGGTATTGGAAGTCCATCGATGTCACTTCTTTGGGACATGATCTCAATTTTTTACCGGGGCGCGATTTTACCGAGATTGGGGAAAGAGGCGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCTTTAGCTAGGGCTGTATACTCAGATTCTGATGTATATATATTTGATGATCCTTTAAGTGCTCTTGATGCTCATATTGCCCAAGAGGTTTTCGTGAACTGTATAAAGGAAGGGCTGCAAGGAAAAACAAGGGTTCTTGTTACCAACCAGCTTCATTTTCTCCCTCAGGTTGATAAAATAATTCTGGTTAATGAAGGCATGATAATGGAGCAAGGAACATTCGAGGAGTTGTCGAAATGTGGGCCTTTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAGTTGATAGTAACGAAGATACGGATAGTCATGAAAAGACTGATGTTTTACCCTTGAATAATGAGGCAATTGTAGAGTTACCAAATGATACAAGCTATGAGAAGAAGGGAAAATTGCAAAAATCGGTACTTGTTAAGAAAGAAGAGAGGGAGACAGGAGTGGTTAGTTGGAAAGTTTTAATGAGATACACATCTGCTTTGGGAGGACTGTGGGTAGTTTCTATACTTTTTGCATGCTACACATTAACAGAAGCTCTTCGAATTTCGAGTAGCACATGGTTAAGTGTGTGGACATCTCAAGATTCAACTGCAGCTTCTCGAGCAGGATATTTTCTTATCATCTATGCAATTTTTTCATTTGGACAGGTATCTGTGGCACTAGCAAACTCTTATTGGTTGATCATTTCAAGCCTTCGTGCTGCAAAAAAATTGCACAATGCAATGCTAGATAAGATCCTACGTGCTCCAATGGTATTCTTCCAGACTAATCCTGTCGGCCGCATAATTAATAGATTTGCGAAAGACACGGGAGACATAGATACCGATGTTTTTAATTTGATGAATACGTTTTTGGGGCAAGTCTGGCAACTACTTTCAACATTTGTTCTTATAGGCACTGTGAGCTCCATATCCCTGTGGGCCATATTGCCACTTCTGATCTTTTTTTATGCTGCTTATACATACTACCAGAGCACAGCTCGGGAGGTGAAGCGCATGGATTCTATTACAAGATCACCTGTTTATGCACATTTTGGAGAATCATTGAACGGTTTGTCGAGCATTCGGGCTTACAAAGCGTATGACAGGATGTCAAGCATCAATGGAAATTTCATGGATAACAATATCAGATTTACTCTTGTGATTATTGGTTCGAACAATTGGCTGGCGGTACGTTTAGAAATCTTAGGAGGCCTCATGATTTGGTTAATAGCAACATTTGCCGTCTTACAAAATGCAAGATCTGAAAACCCTGCAATGATTGCCTCTACAATGGGTCTACTTCTCAGTTATACATTAAACATAACAAGTCTCTTGAGCGGTGTACTTAGACAAGCGAGTAGAGCTGAAAACAGTTTAAATTCGGTCGAACGTGTTGACACGTATATAAATTTAGAAACCGAGGGTCAAAGTATAATTGAGACAAACCGTCCACCACCAGGATGGCCAACAAAAGGATCAATTGAGTTTGAGAATGTTGTTCTGAGGTATAGGCCGGAACTTCCTCCGGTCCTGCATGGATTGTCCTTTGTGGTGCCTTCAACTGAGAAGATAGGTGTAGTTGGAAGAACTAGTGCAGGAAAGTCGAGCATGCTTAATGCATTATTCCGGATTGTTGAACTACAAAGTGGAAGAATCATTATTGATGGTTATGATATTTCTACGTTCGGACTAGTAGATTTGCGAAGAGTTCTTACTATCATACCACAGTCGCCTGTTCTTTTCTCTGGTACTGTTCGTTTCAATCTCGATCCATTTAATGAACACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCACACTTGAAAGATGTAATAATAAGAAATTCATTTGGTCTAGATGCCCAGGTTTCTGAAGGAGGTGACAATTTCAGTGTCGGACAAAGGCAACTATTAAGTCTAGCGAGAGCATTGCTAAGAAGATCAAAGGTTCTTGTCCTTGATGAAGCTACTGCTGCTGTAGATGTTAGAACCGATGCACTTATACAGAAAACTATCAGACAAGAATTCCATTCCTGCACAATGCTCATCATTGCTCACAGATTGAATACAGTTATCGACTGCAACCGGATTCTGTTGCTAGATGCTGGCAAGGTTCTTGAATACAATTCACCTGAGAAACTCTTACAAAATGAAGAAACTGCATTCTACAAAATGGTTCAAAGTACTGGACCTGCAAATGCTGAGTATTTACGTAGCTTGGTGTTCGACAAAAAAGAGAACAATTCAAATGAATATAACAAGGAGTCGGAAAACCGTCTAAGACAGTTAGCATCTACAAATTGGGCTGCTGCTACACAATTTGCAATAGCTTCTAGCCTTTCTTCTTTACATCAACATCTTCAAAGTCCAAATACTAAAGACAATAAAGACATTCTTAATAGAACAAAGGATGCAGTAATTACACTTCAAGAAGTTCTAGAAGGAAAGCTTGATGAAACTATAGAAGAGACATTGACTCAATATCATGTTCCTAGAGATAGATGGTGGTCTACTCTCTATAAAGTTATTGAAGGTCTAGCTCTCTTGATCAAGTTGCCTCAAGACAACTTTCAACAATTAGAACCTGATTTTGAAGGGAGATCATTTGACTAA 3660 0.3932 MGKLMNMITTDANALQQICEQLHGLWSAPFQIIIAMVLLYQQLGVASLVGSLILVLIIPLQAFMNDKMRKLTKEGLQQTDKRVGLMNEILSAMDTVKCYAWETSFQSRIQSIRHEELSWFRKSQLLYALNRFMLNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFSVLRFPLNMLPKLLSQVANANVSLQRLEVLFSAEERNLQQNPPIVSGLPAISIKNGDFSWDPKAEKATLSNINFEIPVGSLVAIIGGTGEGKTSLISAMLGELPLVSDGNATIRGTVAYVPQISWIYNATLRENILFGSKFDHGRYWKSIDVTSLGHDLNFLPGRDFTEIGERGVNISGGQKQRVSLARAVYSDSDVYIFDDPLSALDAHIAQEVFVNCIKEGLQGKTRVLVTNQLHFLPQVDKIILVNEGMIMEQGTFEELSKCGPLFQKLMENAGKMEQVDSNEDTDSHEKTDVLPLNNEAIVELPNDTSYEKKGKLQKSVLVKKEERETGVVSWKVLMRYTSALGGLWVVSILFACYTLTEALRISSSTWLSVWTSQDSTAASRAGYFLIIYAIFSFGQVSVALANSYWLIISSLRAAKKLHNAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDTDVFNLMNTFLGQVWQLLSTFVLIGTVSSISLWAILPLLIFFYAAYTYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMSSINGNFMDNNIRFTLVIIGSNNWLAVRLEILGGLMIWLIATFAVLQNARSENPAMIASTMGLLLSYTLNITSLLSGVLRQASRAENSLNSVERVDTYINLETEGQSIIETNRPPPGWPTKGSIEFENVVLRYRPELPPVLHGLSFVVPSTEKIGVVGRTSAGKSSMLNALFRIVELQSGRIIIDGYDISTFGLVDLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIIRNSFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFHSCTMLIIAHRLNTVIDCNRILLLDAGKVLEYNSPEKLLQNEETAFYKMVQSTGPANAEYLRSLVFDKKENNSNEYNKESENRLRQLASTNWAAATQFAIASSLSSLHQHLQSPNTKDNKDILNRTKDAVITLQEVLEGKLDETIEETLTQYHVPRDRWWSTLYKVIEGLALLIKLPQDNFQQLEPDFEGRSFD 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00217 1219 Pfam ABC transporter transmembrane region 523 784 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g00217 1219 Pfam ABC transporter transmembrane region 2 175 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g00217 1219 CDD ABC_6TM_ABCC_D1 2 195 IPR044746 GO:0140359
Trre6g00217 1219 Gene3D ABC transporter type 1, transmembrane domain 1 200 IPR036640 GO:0005524|GO:0016020
Trre6g00217 1219 Gene3D ABC transporter type 1, transmembrane domain 483 823 IPR036640 GO:0005524|GO:0016020
Trre6g00217 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 832 1075 IPR027417 -
Trre6g00217 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 442 IPR027417 -
Trre6g00217 1219 Gene3D - 825 1078 IPR027417 -
Trre6g00217 1219 SUPERFAMILY ABC transporter transmembrane region 2 203 IPR036640 GO:0005524|GO:0016020
Trre6g00217 1219 Pfam ABC transporter 237 372 IPR003439 GO:0005524
Trre6g00217 1219 CDD ABC_6TM_ABCC_D2 521 817 IPR044726 GO:0140359
Trre6g00217 1219 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 842 1076 IPR003439 GO:0005524
Trre6g00217 1219 Gene3D - 201 466 IPR027417 -
Trre6g00217 1219 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 523 805 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g00217 1219 Pfam ABC transporter 859 1007 IPR003439 GO:0005524
Trre6g00217 1219 ProSitePatterns ABC transporters family signature. 345 359 IPR017871 GO:0005524|GO:0016887
Trre6g00217 1219 CDD ABCC_MRP_domain2 840 1060 - -
Trre6g00217 1219 SUPERFAMILY ABC transporter transmembrane region 520 822 IPR036640 GO:0005524|GO:0016020
Trre6g00217 1219 SMART AAA_5 246 426 IPR003593 GO:0016887
Trre6g00217 1219 SMART AAA_5 868 1047 IPR003593 GO:0016887
Trre6g00217 1219 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 1082 - -
Trre6g00217 1219 FunFam ABC transporter C family member 2 485 823 - -
Trre6g00217 1219 FunFam Multidrug resistance-associated protein member 4 826 1078 - -
Trre6g00217 1219 FunFam ABC transporter C family member 2 213 460 - -
Trre6g00217 1219 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 221 443 IPR003439 GO:0005524
Trre6g00217 1219 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 187 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g00217 1219 CDD ABCC_MRP_domain1 219 419 - -
Trre6g00217 1219 ProSitePatterns ABC transporters family signature. 979 993 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00217 Trre-Chr6 1598102 1605283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00217 203 631 Calmodulin-binding Proteins AT2G36910 22.458 1.67e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00217 - K05665 vun:114175221 2025.75