Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00214 ATGAGTACAGAAGCTCAAACAGTAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAAGCAATAGAAAAGGCCCTCAAAAAGTTATCAGTAAAAGCTGGAGATCAGCTTATAATTGTTGCCATACTTAATTGGTTTAGCAGTCCTAGTATGTTTTCTTTCTTTGGAAGAAAGAGTTTGGGGTACATGGTCTCAGTTGATTCTAGTTATTTTGTTTCATCCAACAAGAAAATCATTTCAGAAAAATTTACCAAGAGAAAGAATGACTATCATATGAACCGATACATCAACAAACTCTCTGAGTACTGTCAAATGAATGAGATTGAATTCCAACTAGAAATGCATGTAGGACCAGCTTCACAGGTTATTTCTGATGCTGCAGCAAAATTTCAGCCTACAACTTTGATACTTGATAAACAGATCCACAGGAACATGAAGAATTTCATGGACAGGATCCCTTGTGGTATGTATAGGATAACAAGCGATAACTCCATTGAAAAGTTGAAAGATCCAAAATCAACAGTTACCAAACTTTCTGAAAGGCAAGAAAATATAAGCTATTCAGAAATGATACCAGGAAGTGAAGATGATGGAGTTTCTCTTCAGATGTCCAAGTCTTCATCTACTGATCTTTTCACGTCAACCGGAGTTTCAAGTCAGTGTAGTACTGATGCCTCGACTTCTAGCATTGCAAGTTCACAATATGTCCTTCAAAAATACCAAATTGAGGAGTTTTTTCCTGAACAAGGGAGGCAATCACTATTTCATATTTCTGGAATTCAAGAAACAAGCCAAAAAGAAGTTATTCATATGGAGGAAGATTTTACGAATCCAGTTTGTTCTGTGTGTAATAATAGAAGACTGAAAATTGGATCGAAAAGAGACTTCAGTTACTTAGAGCTCTACACTGCTACACAAGGATTTTCTGCTAAGAACTTTCTGTCAGAAGGTGGGTTTGGATCTGTTTACAAAGGACAACTTGATGGAATGCCGATTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAATTTAGGTCTGAAGTCAATGTACTTCGAAGAGCGAGACATGAGAATGTGGTTATGCTTCTAGGTTCATGTTCAGAAGGAAATAATAGGCTTCTTGTTTATGAATATGTTTGCAATGGCTCACTTGATCAACATCTATCAGAACACTCTCGTTTACCTCTTACTTGGGAAGATAGGATCAAAGTAGCTATTGGAGCAGCCAAAGGCTTACTATACTTGCACAAAAATAGCATAATACACAGAGATGTCAGACCAAACAATATCCTTGTAACACATGATCTCCAACCATTGATAGGAGATTTCGGACTTGCAAGAACTCACAACAAAGATTTGACACACTCGACAGAAGTTGTTGGTACATGGGGGTATTTGGCACCAGAATATGCAGAATATGGCAAAGTGTCAAGTAGAACAGATGTATATTCTTTTGGAGTCGTTCTACTACAACTTATCACTGGAATGAGAACTACAGACAAAAGACTCGGAGGAAGAAGCCTCGTTGGATGGGCAAGGCCACTTTTAAAAGAGAGAAATTATCCAGATCTAATTGATGAGAGGATCATTGATAGTCATGATTACCATCAATTATTTTGGATGATACGACTAGCTGAGAAATGTCTAAGTAGGGACCCTAAGAAAAGACTGACTATGGTTGAGGTTGTTAATGCTTTGACCGACATTTCCGAAGGCAACACATGTGACATTGGAACAGGCGATTACACCCCTGCAATGTCAGATTCATCCTATAGTGAATCAGAATTTGATGAAAATGAAGATGAGAATGGACGTTTCGAGGATGAAGGTGAGTTACTAAGCACCATCTCAGAATCCACAGAAGGCAGTGATTACACTATTCAGATGAGACATATGAGTGTGAGGCAGCCACCATCTCCTCCAATTAAAAACTTCTATTCAAGTGGCTCAAGCTCATTTCAGTTTTCTGATGAATCAAATAGTGACTATGAAGCACATAATGAAAAGAGTACAGAAATACCAATATCCAAAGTTGGTTTAATCAACTCTTAG 2067 0.3788 MSTEAQTVVVIQDASRDVGLKAIEKALKKLSVKAGDQLIIVAILNWFSSPSMFSFFGRKSLGYMVSVDSSYFVSSNKKIISEKFTKRKNDYHMNRYINKLSEYCQMNEIEFQLEMHVGPASQVISDAAAKFQPTTLILDKQIHRNMKNFMDRIPCGMYRITSDNSIEKLKDPKSTVTKLSERQENISYSEMIPGSEDDGVSLQMSKSSSTDLFTSTGVSSQCSTDASTSSIASSQYVLQKYQIEEFFPEQGRQSLFHISGIQETSQKEVIHMEEDFTNPVCSVCNNRRLKIGSKRDFSYLELYTATQGFSAKNFLSEGGFGSVYKGQLDGMPIAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRLPLTWEDRIKVAIGAAKGLLYLHKNSIIHRDVRPNNILVTHDLQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDERIIDSHDYHQLFWMIRLAEKCLSRDPKKRLTMVEVVNALTDISEGNTCDIGTGDYTPAMSDSSYSESEFDENEDENGRFEDEGELLSTISESTEGSDYTIQMRHMSVRQPPSPPIKNFYSSGSSSFQFSDESNSDYEAHNEKSTEIPISKVGLINS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00214 688 ProSiteProfiles Protein kinase domain profile. 309 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00214 688 MobiDBLite consensus disorder prediction 591 612 - -
Trre6g00214 688 MobiDBLite consensus disorder prediction 639 675 - -
Trre6g00214 688 CDD STKc_IRAK 315 574 - -
Trre6g00214 688 Gene3D Transferase(Phosphotransferase) domain 1 384 584 - -
Trre6g00214 688 ProSitePatterns Tyrosine protein kinases specific active-site signature. 425 437 IPR008266 GO:0004672|GO:0006468
Trre6g00214 688 Gene3D Phosphorylase Kinase; domain 1 281 383 - -
Trre6g00214 688 Pfam Protein tyrosine and serine/threonine kinase 312 571 IPR001245 GO:0004672|GO:0006468
Trre6g00214 688 SUPERFAMILY Protein kinase-like (PK-like) 292 571 IPR011009 -
Trre6g00214 688 FunFam Proline-rich receptor-like protein kinase PERK8 271 383 - -
Trre6g00214 688 MobiDBLite consensus disorder prediction 645 665 - -
Trre6g00214 688 MobiDBLite consensus disorder prediction 598 612 - -
Trre6g00214 688 PANTHER OS01G0253100 PROTEIN 192 575 - -
Trre6g00214 688 SMART tyrkin_6 309 571 IPR020635 GO:0004713|GO:0006468
Trre6g00214 688 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 384 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00214 Trre-Chr6 1572282 1576865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00214 297 586 Trihelix Transcription Factor Family AT1G70460 47.508 1.61e-80 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre6g00214 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00214 - - gsj:114417376 883.634