Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00213 ATGAGTACAGAAGCTCAAACAGTAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAAGCAATAGAAAAGGCCCTCAAAAAGTTATCAGTAAAAGCTGGAGATCAGCTTATAATTGTTGCCATACTTAATTGGTTTAGCAGTCCTATGGGGTACATGGTCTCAGTTGATTCTAGTTATTTTGTTTCATCCAACAAGAAAATCATTTCAGAAAAATTTACCAAGAGAAAGAATGACTATCATATGAACCGATACATCAACAAACTCTCTGAGTACTGTCAAATGAATGAGATTGAATTCCAACTAGAAATGCATGTAGGACCAGCTTCACAGGTTATTTCTGATGCTGCAGCAAAATTTCAGCCTACAACTTTGATACTTGATAAACAGATCCACAGGAACATGAAGAATTTCATGGACAGGATCCCTTGTGGTATGTATAGGATAACAAGCGATAACTCCATTGAAAAGTTGAAAGATCCAAAATCAACAGTTACCAAACTTTCTGAAAGGCAAGAAAATATAAGCTATTCAGAAATGATACCAGGAAGTGAAGATGATGGAGTTTCTCTTCAGATGTCCAAGTCTTCATCTACTGATCTTTTCACGTCAACCGGAGTTTCAAGTCAGTGTAGTACTGATGCCTCGACTTCTAGCATTGCAAGTTCACAATATGTCCTTCAAAAATACCAAATTGAGGAGTTTTTTCCTGAACAAGGGAGGCAATCACTATTTCATATTTCTGGAATTCAAGAAACAAGCCAAAAAGAAGTTATTCATATGGAGGAAGATTTTACGAATCCAGTTTGTTCTGTGTGTAATAATAGAAGACTGAAAATTGGATCGAAAAGAGACTTCAGTTACTTAGAGCTCTACACTGCTACACAAGGATTTTCTGCTAAGAACTTTCTGTCAGAAGGTGGGTTTGGATCTGTTTACAAAGGACAACTTGATGGAATGCCGATTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAATTTAGGTCTGAAGTCAATGTACTTCGAAGAGCGAGACATGAGAATGTGGTTATGCTTCTAGGTTCATGTTCAGAAGGAAATAATAGGCTTCTTGTTTATGAATATGTTTGCAATGGCTCACTTGATCAACATCTATCAGAACACTCTCGTTTACCTCTTACTTGGGAAGATAGGATCAAAGTAGCTATTGGAGCAGCCAAAGGCTTACTATACTTGCACAAAAATAGCATAATACACAGAGATGTCAGACCAAACAATATCCTTGTAACACATGATCTCCAACCATTGATAGGAGATTTCGGACTTGCAAGAACTCACAACAAAGATTTGACACACTCGACAGAAGTTGTTGGTACATGGGGGTATTTGGCACCAGAATATGCAGAATATGGCAAAGTGTCAAGTAGAACAGATGTATATTCTTTTGGAGTCGTTCTACTACAACTTATCACTGGAATGAGAACTACAGACAAAAGACTCGGAGGAAGAAGCCTCGTTGGATGGGCAAGGCCACTTTTAAAAGAGAGAAATTATCCAGATCTAATTGATGAGAGGATCATTGATAGTCATGATTACCATCAATTATTTTGGATGATACGACTAGCTGAGAAATGTCTAAGTAGGGACCCTAAGAAAAGACTGACTATGGTTGAGGTTGTTAATGCTTTGACCGACATTTCCGAAGGCAACACATGTGACATTGGAACAGGCGATTACACCCCTGCAATGTCAGATTCATCCTATAGTGAATCAGAATTTGATGAAAATGAAGATGAGAATGGACGTTTCGAGGATGAAGGTGAGTTACTAAGCACCATCTCAGAATCCACAGAAGGCAGTGATTACACTATTCAGATGAGACATATGAGTGTGAGGCAGCCACCATCTCCTCCAATTAAAAACTTCTATTCAAGTGGCTCAAGCTCATTTCAGTTTTCTGATGAATCAAATAGTGACTATGAAGCACATAATGAAAAGAGTACAGAAATACCAATATCCAAAGTTGGTTTAATCAACTCTTAG 2037 0.38 MSTEAQTVVVIQDASRDVGLKAIEKALKKLSVKAGDQLIIVAILNWFSSPMGYMVSVDSSYFVSSNKKIISEKFTKRKNDYHMNRYINKLSEYCQMNEIEFQLEMHVGPASQVISDAAAKFQPTTLILDKQIHRNMKNFMDRIPCGMYRITSDNSIEKLKDPKSTVTKLSERQENISYSEMIPGSEDDGVSLQMSKSSSTDLFTSTGVSSQCSTDASTSSIASSQYVLQKYQIEEFFPEQGRQSLFHISGIQETSQKEVIHMEEDFTNPVCSVCNNRRLKIGSKRDFSYLELYTATQGFSAKNFLSEGGFGSVYKGQLDGMPIAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRLPLTWEDRIKVAIGAAKGLLYLHKNSIIHRDVRPNNILVTHDLQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDERIIDSHDYHQLFWMIRLAEKCLSRDPKKRLTMVEVVNALTDISEGNTCDIGTGDYTPAMSDSSYSESEFDENEDENGRFEDEGELLSTISESTEGSDYTIQMRHMSVRQPPSPPIKNFYSSGSSSFQFSDESNSDYEAHNEKSTEIPISKVGLINS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00213 678 CDD STKc_IRAK 305 564 - -
Trre6g00213 678 Gene3D Transferase(Phosphotransferase) domain 1 374 574 - -
Trre6g00213 678 MobiDBLite consensus disorder prediction 581 602 - -
Trre6g00213 678 MobiDBLite consensus disorder prediction 629 665 - -
Trre6g00213 678 SMART tyrkin_6 299 561 IPR020635 GO:0004713|GO:0006468
Trre6g00213 678 ProSitePatterns Tyrosine protein kinases specific active-site signature. 415 427 IPR008266 GO:0004672|GO:0006468
Trre6g00213 678 MobiDBLite consensus disorder prediction 588 602 - -
Trre6g00213 678 SUPERFAMILY Protein kinase-like (PK-like) 282 561 IPR011009 -
Trre6g00213 678 MobiDBLite consensus disorder prediction 635 655 - -
Trre6g00213 678 PANTHER OS01G0253100 PROTEIN 182 565 - -
Trre6g00213 678 ProSiteProfiles Protein kinase domain profile. 299 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00213 678 Gene3D Phosphorylase Kinase; domain 1 271 373 - -
Trre6g00213 678 Pfam Protein tyrosine and serine/threonine kinase 302 561 IPR001245 GO:0004672|GO:0006468
Trre6g00213 678 FunFam Proline-rich receptor-like protein kinase PERK8 261 373 - -
Trre6g00213 678 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 374 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00213 Trre-Chr6 1572282 1576865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00213 287 576 Trihelix Transcription Factor Family AT1G70460 47.508 1.50e-80 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre6g00213 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00213 - - gmx:100794450 879.782