LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00212	ATGTCTAACTCTCATCATCAAATAGTAAAACAACATTCTGAGAATTCATTTTGCTCAGTTTGTTACAACATGAGACCAAAACTTGATTGGACAAAAAGAGATTTCACATATGCTGAGTTGCATGCAGCAACACATAGTTTTTCCAACAAGAATTTTCTATCAGAAGGTGGTTTTGGTTCTGTCTATAAAGGGGAGATTCATGGACAAAAGATTGCTGTTAAAAAATGTATTCATGCAAGTCACAAACAAGAGAAGGAGTTCAAATCTGAAGTTGATGCACTAAGCAAAGCAAGACATGAGAATGTTGTTATGTTACTCGGATCATGTTCAGAAGGAAAAAATAGGCTTCTTGTTTATGAATATGTTTGCAATGGTTCACTAGACCAACATTTATCAAGACATTCTCGTAAACCTCTTTGTTGGAAAGATAGAATGAAAGTAGCTAAAGGAGCTGCCAAAGGACTTCTATATCTGCATCAGAATAACATCATACATAGAGATATAAAACCAAACAACATTCTTCTTACACATGACTATGAAGTTTTGCTAGGTGATTTTGGTTTGGCCAAAATTGCAAGTGAAGAATTCTCATGTTCAATAGAATGTCCTGGAAATCTAGCATATTGGGCACCAGAATATGCAGCATATGGTAAAGTATCAAATAAAACAGATGTGTATTCTTTTGGTGTGGTTCTTGTTGAGCTAATAACAGGAATGAGAACTACAGACAGAAGACTTAGTGGAAAGAGTCTAGTGGGATGGGCTAGGCCACTACTAATAGAAGGGAATTGTAAAAAATTTGTTGATGAAAGGATAATGGATTCCCATGACTGTCATCAAATCCATTGGATGAGTCGTCTAGCTGGAAATTGTTTGAACAAAGATCCTCATAAACGATTGGATATGAGTACAGTGGTCAAAGCCTTAACACATATAGAGGAAGGTTGCAGTTGCTGCATTTTGGGAAAAGACAGTAGTGCCCTTGCCATGTCAGACTATTCTAAATCAAAAGATGATATGCAAGACTCTTTAGAATCAGATGGTGAAAGTGGAAATATTGGAAGTAGTAGTTCCATCACTGAAAATTGCAAAAACCTCAAATTATAA	1107	0.3577	MSNSHHQIVKQHSENSFCSVCYNMRPKLDWTKRDFTYAELHAATHSFSNKNFLSEGGFGSVYKGEIHGQKIAVKKCIHASHKQEKEFKSEVDALSKARHENVVMLLGSCSEGKNRLLVYEYVCNGSLDQHLSRHSRKPLCWKDRMKVAKGAAKGLLYLHQNNIIHRDIKPNNILLTHDYEVLLGDFGLAKIASEEFSCSIECPGNLAYWAPEYAAYGKVSNKTDVYSFGVVLVELITGMRTTDRRLSGKSLVGWARPLLIEGNCKKFVDERIMDSHDCHQIHWMSRLAGNCLNKDPHKRLDMSTVVKALTHIEEGCSCCILGKDSSALAMSDYSKSKDDMQDSLESDGESGNIGSSSSITENCKNLKL	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00212	368	Gene3D	Phosphorylase Kinase; domain 1	22	121	-	-
	Trre6g00212	368	SUPERFAMILY	Protein kinase-like (PK-like)	31	311	IPR011009	-
	Trre6g00212	368	MobiDBLite	consensus disorder prediction	346	368	-	-
	Trre6g00212	368	PANTHER	OS01G0253100 PROTEIN	16	313	-	-
	Trre6g00212	368	ProSiteProfiles	Protein kinase domain profile.	47	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00212	368	PIRSF	ILK	3	325	-	-
	Trre6g00212	368	SMART	serkin_6	47	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00212	368	Gene3D	Transferase(Phosphotransferase) domain 1	122	320	-	-
	Trre6g00212	368	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	163	175	IPR008271	GO:0004672\|GO:0006468
	Trre6g00212	368	FunFam	Proline-rich receptor-like protein kinase PERK8	8	121	-	-
	Trre6g00212	368	MobiDBLite	consensus disorder prediction	338	368	-	-
	Trre6g00212	368	Pfam	Protein tyrosine and serine/threonine kinase	50	309	IPR001245	GO:0004672\|GO:0006468
	Trre6g00212	368	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1	122	324	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00212	Trre-Chr6	1567912	1570109	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00212	35	316	Trihelix Transcription Factor Family	AT5G38560	44.407	7.16e-73	238

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Trre6g00212		PK_Tyr_Ser-Thr	4.2e-51	CL0016