LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00211	ATGAAGAGAGTGAAAAATGAGAATGAAGATGATGTGCTCTGCAATGATCAAACACAGTCACGATTGAATGGTGAAGGTAACGGAGGAAGTGTTAGTGGTGGAGTTGTTCTCAAAAAAGGTCCATGGACATCTGCGGAAGATGCTATTTTGATTGACTACGTCAGGAAGCATGGAGAGGGGAACTGGAACGCTGTTCAGAAGCATTCAGGCCTGTCTCGATGTGGAAAAAGTTGCCGACTGAGATGGGCAAATCACTTAAGGCCAAATTTAAAGAAAGGATCATTTACTGCTGAGGAGGAGCAATTGATTGCTCAACTCCATTCCGAAATGGGAAACAGATGGGCACGTATGGCAGCACACTTGCCTGGTCGTACAGATAATGAAATAAAGAACTACTGGAATACCCGGACCAAGAGGCGTTCTCGGGCTGGCTTGCCACTGTATCCTCCAGATGTGTCTTTGCGGAAAATGCAAGGGAATCAACGCGGCCAAGGCACTGGTAGAATCGATGATGGTGATAGAGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATCCATGATGTAATATTTGACAATTTGAAGGAAAATCAGGGAATCTTACCTATTGCAATTGTGCCTGAGAATCCTGATATTTCTGCTAATAGCATTCTGCTTAACGGTCTTGATTCTCCTCCATATTGTAATTCTGTGCCATCAACACTACCTAACCATCACCATCTTCGAGAATCAACCATGACACTTCTTGGTTCAAGTGGAACGAACAAGAATTGGTTTTATCCATTTTACCATGTTCAGGATCATAGTTCTGATAAGATTGTACAATCGTTTGGATTGCATTCTCCCCTTGATCCTGGTCTTTCCTCAAACAACTCAATGTATTACCGCCATTCCCTATCAAATGGCAATTCTTCTACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTAGCTGGGGCGGTACCTTTCCCCCATCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCTACATGGTGCGCTAGAGTCCGGTTCTTCTTCACCGCATAATAGTGGCACGCTCGAGGCCATAATTTATCAGAAGAAGACTATTCCAAATTCAAAGAACAATTATTCTGACAAGAGTTCACATTCATCTACTGCAACTCCTGTTGACAGAGCTGAGAGTTCTGCTTTGAACATGAATGAGACAGAATGGGAAGATTACAATGACCATGCATCTCCCTTTGGTGCAACCTCAATCTTGAATGAGTGTCCTGCTGTTAACTCCAATGCAAACTCATGGGATAAATTGACAGCTTCTCAGAACTTTAGTGGAAACAATGTGAGATATGAGCCTGTTGACCAAGTTTGTACCCCGAACAGTGAAAATCCTCTGTCTATGTTGAACATCACTTGGCCAGATGTCTTGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCATGAGAAGAACATGAATGATGCTAGGGACAACTTAACAGATTACAAGCATGTGGCTGGTGGGACTTATTCTTCAAGTACAGGGGGTTACTTTATGCACATGGCTTAA	1602	0.4332	MKRVKNENEDDVLCNDQTQSRLNGEGNGGSVSGGVVLKKGPWTSAEDAILIDYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTAEEEQLIAQLHSEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRSRAGLPLYPPDVSLRKMQGNQRGQGTGRIDDGDRGHHDFLPKNNYEIHDVIFDNLKENQGILPIAIVPENPDISANSILLNGLDSPPYCNSVPSTLPNHHHLRESTMTLLGSSGTNKNWFYPFYHVQDHSSDKIVQSFGLHSPLDPGLSSNNSMYYRHSLSNGNSSTSKPTSKAVKLELPSLQYPETGFGSWGGTFPPSPLNESVDVFNQSPLLHGALESGSSSPHNSGTLEAIIYQKKTIPNSKNNYSDKSSHSSTATPVDRAESSALNMNETEWEDYNDHASPFGATSILNECPAVNSNANSWDKLTASQNFSGNNVRYEPVDQVCTPNSENPLSMLNITWPDVLLASDWHEQCYGHEKNMNDARDNLTDYKHVAGGTYSSSTGGYFMHMA	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00211	533	Gene3D	-	94	140	-	-
	Trre6g00211	533	SMART	sant	91	139	IPR001005	-
	Trre6g00211	533	SMART	sant	38	88	IPR001005	-
	Trre6g00211	533	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	17	502	-	-
	Trre6g00211	533	MobiDBLite	consensus disorder prediction	144	176	-	-
	Trre6g00211	533	MobiDBLite	consensus disorder prediction	1	32	-	-
	Trre6g00211	533	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	87	141	IPR017930	-
	Trre6g00211	533	SUPERFAMILY	Homeodomain-like	38	133	IPR009057	-
	Trre6g00211	533	ProSiteProfiles	Myb-like domain profile.	37	86	IPR001005	-
	Trre6g00211	533	FunFam	Transcription factor GAMYB	94	140	-	-
	Trre6g00211	533	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	34	86	IPR017930	-
	Trre6g00211	533	Pfam	Myb-like DNA-binding domain	92	135	IPR001005	-
	Trre6g00211	533	Pfam	Myb-like DNA-binding domain	39	86	IPR001005	-
	Trre6g00211	533	MobiDBLite	consensus disorder prediction	382	406	-	-
	Trre6g00211	533	FunFam	MYB-related transcription factor	38	91	-	-
	Trre6g00211	533	ProSiteProfiles	Myb-like domain profile.	87	137	IPR001005	-
	Trre6g00211	533	CDD	SANT	41	86	IPR001005	-
	Trre6g00211	533	Gene3D	-	38	91	-	-
	Trre6g00211	533	CDD	SANT	94	135	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00211	Trre-Chr6	1563477	1567198	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00211	36	510	MYB Transcription Factor Family	AT3G11440	42.510	4.68e-103	319

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Trre6g00211		Myb_DNA-bind_6	3.3e-15	CL0123