LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00207	ATGTCAACCAAAAAGAAACAAAAACCGAAACGCTACGATAGCGATGAAGATGACGACATTTTCTACTACCGCTTCTGCGATAAATCATCAATCCCCAACACCGCCACCGCCGCCACATCCAATAACCAAATCCAATCAAAATCAAACAACAAAGGATCATCGATGATATCAACAACAGGTGAATCCTTAGCACCATCAAAATCAACGCTATACGTTTCAAATCTTGATTACTCCCTAACAAACTCCGATCTCCACACTCTCTTTTCAACTTTCGGACGTATCGCGCGTGTAACGGTTCTTAAAGACCGTCACACGCGCCTCAGCCGTGGTGTTGCATTTATCCAATTTGTTTCTCGTCAGGACGCGCAAACCGCCGTGAAGGAAATGAATAAGAAGATTCTTAATGGACGGACTTTGACGGCTTCTATTGCGGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAGGCGCGTGTATAATTCAGAAACTGGTTTGTGTTTTGAGTGTGGGGATCATGGTCATTTGTCTTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGGCTCGGCCGCAGCCTAAGAAGCCAAGGCGTGGGTTTGGTGGGTTTAGGGATAGAGAGGATGATGAGGAGGACGAGGAAGAAGATGGTGGGAGGTATGGTACGGCGCAGTTTGAGGAAGAAAATTGGGCTTCCGTGGTGGATAATGGAGCAGGTGAGAGGTTGTTGGGGATGGATGGAAATGATGATGAGGCTATGGATGACAAGAAGAGGAAGAAGAAGAAGAAGAAAGGGAAGAGAAGTGGGTATTTTAGTGATGAGAGTGATCATGATGATGATGATTGA	843	0.4603	MSTKKKQKPKRYDSDEDDDIFYYRFCDKSSIPNTATAATSNNQIQSKSNNKGSSMISTTGESLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRQDAQTAVKEMNKKILNGRTLTASIAADNGRAPEFIRRRVYNSETGLCFECGDHGHLSYECPKNQLGPRARPQPKKPRRGFGGFRDREDDEEDEEEDGGRYGTAQFEEENWASVVDNGAGERLLGMDGNDDEAMDDKKRKKKKKKGKRSGYFSDESDHDDDD	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00207	280	Gene3D	-	155	194	-	-
	Trre6g00207	280	ProSiteProfiles	Zinc finger CCHC-type profile.	166	181	IPR001878	GO:0003676\|GO:0008270
	Trre6g00207	280	Pfam	Zinc knuckle	165	181	IPR001878	GO:0003676\|GO:0008270
	Trre6g00207	280	SUPERFAMILY	RNA-binding domain, RBD	64	157	IPR035979	GO:0003676
	Trre6g00207	280	SMART	rrm1_1	69	142	IPR000504	GO:0003723
	Trre6g00207	280	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	13	278	IPR044598	GO:0000398\|GO:0005689
	Trre6g00207	280	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	68	146	IPR000504	GO:0003723
	Trre6g00207	280	CDD	RRM_ZCRB1	67	142	IPR034219	-
	Trre6g00207	280	MobiDBLite	consensus disorder prediction	181	280	-	-
	Trre6g00207	280	MobiDBLite	consensus disorder prediction	37	61	-	-
	Trre6g00207	280	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	70	139	IPR000504	GO:0003723
	Trre6g00207	280	Gene3D	-	34	225	IPR012677	-
	Trre6g00207	280	SMART	c2hcfinal6	165	181	IPR001878	GO:0003676\|GO:0008270
	Trre6g00207	280	SUPERFAMILY	Retrovirus zinc finger-like domains	155	182	IPR036875	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00207	Trre-Chr6	1526133	1526975	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00207	68	144	Eukaryotic Initiation Factors Gene Family	AT1G49760	37.662	3.67e-09	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g00207	K13154		-	psat:127137495	354.755