Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00200 ATGGCAGAAACTGCTGTATTGTTTGCTCTGGGGGAAGTGTTCCAATTCCTAAAAGAAGAAACAAATCTTCTGAGAGGTGTACACAATGATTTTTCAGACATCAAAGATGAACTTGAGAGCATTCAAGTCTTCCTCAAAGATGCAGACAGAAGGGCTGCAGATGAAGCAGACACCAAAGATGGAATAAGAACTTGGGTGAAGCAGCTGAGAGAAGCATCATTTCGCATCGAAGATGTCATTGACGAATACATTCGGCTGATGTACAGGGATAATCCTACTGGATGTGGATCTTTAGTCTGCAAAATTCCAAGCCTGATAAAAAATTTGATTCCCCATCATCAGATAGTATCTGAGATTCATGACATTAAATTGTCAATTCGTGGAATCAAGGAAAGAAGTGAAAGGTATAACTTTCAAATTTCACATGAACCAGGATTATCAAGCCGCAGCAGCAGCATGAGAGAGATAGAAAATGGAAGATGGCGTGATCCTCGACTGTCTTCCCTTTTCATTGAAGAAACAGAAACTGTAGGAATTGAAGGCCCAAAAGAAGAATTGTCTGGTTGGTTATTAGATGGTTCAGTTGAGCGCACAGCAATATCAGTGGTAGGAATGGGGGGTCTAGGTAAAACAACTCTTGCCAAGCTAGTTTTTGACAACCAAAAGGTATCAGCACACTTTGATTGTCGTGCTTGTGTCACAGTTTCTCAATCATACACTGTGAGAGGTTTGTTGATAAACATGATGGAGCAATTTTGTCGGGGAACTGAAGACCCTCTTCCACAGATGTTACACAAAATGGATGACAAGTCGCTGATTATAGAAGTGAGGCAATACTTGCAACATAAGAGGTTTTTGATATTATTTGATGATGCATGGCAAGAAGATTTTTCCGATCAAATTGAATTTTCCATGCCTAACAACAACAAAGGTAGCAGGATCATAATCACCACTAGAATGATGCATGTTGCAGAGTTTTTCAAGAAATCCTTTCTAGTCCATGTTCACAAACTGAAACTTTTGCCGCCAAATAAAGCATGGGAGCTCTTCTGCAAGAAAGTATTTAGATTTGAACTTGGTGGCCATTGTCCACCGGACCTTGAGGCTGAGTCAAGAGAAATTGTTCAAAAATGCAAGCAGCTACCTCTGGCAATTGTAGCCATTGGTGGTCTACTTTCAACAAAATCTAAAACATTGATTGAATGGAAAAAGGTGAGTCAAAATCTGAGCCTTGAATTAGGACGTAATGCCCATTTAACTAGTCTAACAAAGATTTTGTTGCTAAGTTATGATGGCCTTCCTTACTACTTGAAACCATGCATTTTGTATTTTGGTTTATATCCAGAGGACTGTGTTATTAATCATAGGAGATTAATTCGACAATGGATAGCTGAAGGGTTTGTTAAATTGGAAGAGAGAAGAACTCCAGAGCAAGTTGCAGAGGAGTACTTGTCTGAGTTGATTCAGAGAAGTCTGGTTCAAGTCTCAAATGTTGGCTTTGAAGGGAAAGTTCAAACATGTCAAGTACATGACTTACTGCGGGAAGTGATGATTAGAAAAATGAAGGATTTAAGTTTCTGTCAATGTGTACACGAAGATAGTGAATCAATCGCGGTTAGAAAAACTAGACGCCTATCTATAGCCATGAGTCCCAACAATGTGTTCAGAAGCACTAACAATTCACATTTTCGTGCTATTCATGTATTTGGAAACGGTGGTTCGTTGGAGCATTTCATCTGTATGTTGTGTTCCCAGTCTAGGATTTTAAAGCTACTTGACATGCAAGGTACATCATTGAATCATATCCCTAAAAATTTGGGGAATCTTTTTCACTTGAGGTACATCAACCTAAGGAATACAAAAGTAAAGACTCTTCCTAAATCTGTTGGTGAGCTACAGAATTTAGAGACACTGGATTTAAGAGAAACACTCGTGCATGCATTACCAAGTGAAATAAACAAGCTCAGAAAGTTACGACATCTACTTGCTTTCCTCCGTAACTACGAAGAAAAATATTCTGTTTTGGGCTTTACAACAGGTGTGCTAGTGGAAAAAGGTATTAAAAACTTGACTTCCCTACAAAATATTTATTATGTCGATGTAGATCACGGGGGAGTAGATTTCATTGAAGAGATGAAAATGTTAAAGCAATTAAGGAAGTTAGGTTTAAAGCTTGTAAGAAGAGAGCATGGGAATGCCATCAGTGCTGCAGTAGTGGAGATGCAACACCTTGAATCACTAAATATCACTGCAATTTCAGAGGATGAAATTATTGACTTAAACTTTGTGTCAATCCCACCAAAACTTCAGCGTCTTCATTTGCAAGCTAGACTAGAGAGGTTGCCGGATTGGATACCAAAACTTGAGTGTCTTGTTAAAATAAGGCTTGGATTATCAAAGCTGAACGTTGATCCAATGCAGTCACTGAAAAACTTGCCAAATCTGCTGAAGCTCTCTTTGTGGGAGAATGCCTATGATGGTGAAATTTTGCATTTTCAAAATGGAGGATTTCAAAAATTGAAAGAACTGATTCTCAGTCACTTGAATGCAGTAAATTCTATCCTTATAGAGAATGGAGCTTTGCTCTCTCTTGAACATCTTAAAATGGAAAAGATCCCTCAACTGAAGGAGGTACCCCCTGGCATTGAACCCTTGAATAAACTCAAAGTCATTGACCTAGTTGATATGCCAGATGAATTTGTTAAGAGCATTGATCCAGACAAAGGACACAGCCACCGGATTATCAAGCATGTTCCGATTCTAGCTTCAAAAGATAAAGAAGTTCAGGTTCTCCATGAAAACAATGTTAAGATATACAAAGTGAAAAAACACAATACTTGCCAGAATGATCCCAACAGAATAACACAAAAGAAGCAGCTAGCAGAAAATGTGAGTGAAATGGCAGAAAGTGCAGTATTATCGGCCGTGGGGGAAGTGTTTCAACTTCTTAAGAAAGAAAAAAATCTTCTGCAAGGTGTACATACTGATTTTTCAGACATCAAAGGTGAACTAGAAAGCATTCAAGTCTTCCTCAAAGATGCAGATAGAAGGGCAGCAGATGAAGCAGATACCAACGACGGAATAAGAACTTGGGTTAAGCAAATGAGAGAAGCATCATTTCGCATTGAAGATGTCATTGATGAATACCTTCGGAAGATCCATAGGTACAACCCTCCTGGATGCGGATCTTTATTCGGCAAGATTGCAAGCCTAAACAAAACTTTTATTCCCCGTCATAAAATTGCATCAGAGATTCAGGACATTAAGTTGTCAATTCGTGGAATCAAGGAAAGAAGCGAGAGGTATAACTTTCAAATTTCACATGACCAAGGATCTTCAAGAGGCAGAAACAGCACTGGAGAGACAGAAAATGGAAGATGGCGTGATCCTCGACTGTCTGCCCTTTTCATTGAAGAAACAGAAATTGTAGGATTTGAATGTCCGAGAGAGCAATTGTTTGGTTGGTTATTGGAGGGTGCATCTGAGCGCACCGTGATTTCAGTGGTGGGAATGGGAGGTATAGGGAAAACAACCCTCGCCAAGCTAGCTTTTGACAGCCAAAAGGTAACAACACAGTTTGATTGTCGTGCTTGCATCGCAGTTTCTCAATCATACACTGTGAGAGGTTTATTGATAAACATGATGGAGCAATTTTGTCGGGAAACTCAAGACCCTCTTCCGCAAATGTTACACAAAATGGATGACAAGTCACTGATTATTGAAGTGAGGCAATACCTACAAAATAAGAGGTATTTGATATTCTTTGATGATGTATGGCAAGAAGATTTTTCTGACCAGGTTGAATTTTCCATGCCTAATAATAATAAAGGTAGCAGGATAATAATCACTACTAGAATGATGCAAGTGGCAGATTTTTTCAAGAAATCCTTTCTAGTTCATGTTCACAACCTACAACTTTTGCCTCCAAACAAAGCATGGGAACTCTTCTGCACAAAAGTATTTAGATTTGAATTTGGTGGGCAATGTCCGACGGAGCTTGAAGTTGTGTCAAAAGAAATTGTTAAAAAATGCAAGCAGCTACCTCTAGCAATTGTAGCCATTGCTGGTCTACTTTCAACAAAATCTAAAACAATGGTTGAATGGAAAAAGGTTAGTCAAAACCTGAGCCTGGAGTTGGGACGTAATGCCCATTTAACGAGTCTAACAAAGATTTTGTCGCTTAGTTATGATGGCCTTCCTTGGTACTTGAAACCATGCATTTTTTATGTTGGTATATATCCAGAGGACTATTCTATTAATCATAAGAGATTAACTCGACAATGGATAGCCGAAGGGTTTGTTAAATCTGATGAGAGACAAACTCCAGAGCAAGTTGCAACGGAGTACTTGTCTGAATTGATTCACAGAAGTCTGGTTCAGGTCTCAACTGTTGGCTTTGAAGGGAAAGTTAAAACATGTCGAGTCCATGATTTATTTCGGGAAGTGATCATTAGGAAAATGAAGGAATTAAGTTTCTGTCATTGCATGCAAGAAGATAGTGAATCAATCGAAGTTGGAAACACTAGACGCTTATCTATAGCCACTAATCCCAACAGTGTGTTGAAGAGCGCTAAGAATTCACATTTTCGTGCGATTCATGTGTTTGAAAGAGATGGATCATTGGAGCATTTGATGGGTAAAATGTGTTCACAGTCTAGAATTTTGAAGGTACTTGACATTCAAGGTACATTATTGAATCGTATTCCTAAAACTTTGGGGAGACTTTTCCACTTAAGGTACATAAACTTAAGTTATACAAAGGTAAAGGCCCTTCCTAAATCAGTTGGTGAGCTACAGAACTTAGAGACATTAGATTTGAGAGAAACACTTGTGCAAGAACTACCACGCGAAATAAACAAGCTAGCAAAGCTACGACACCTTCTTGCTTTCCATCGTAACTATGAAGCAAATTATTCTCTTTTAGGCTTTACAACTGGTGTGCGGATGGAAAAAGGTATTAAAAACATGACTTCCTTACAAAATCTTTATTATGTGGAGGTAGATCATGGTGGGGTAGATCTCATTCAAGAGATGAAAATGTTAAGGCAGTTACGGAGGTTAGGTTTAAGGCATGTAAGAAGAGAGCATGGAAATGCCTTATGTGCTGCAGTAGTAGAAATGAAACACCTTGAAAATCTTAATATCACTACCATAACTGCAGATGAAACAATAAACTTGAACTGTGTCTCATCTCCACCCCAACTTCAGCGGCTACATTTGAAAGCTAAACTAGATGCATTGCCTGATTGGATTCCAAAACTTGAGTATCTTGTTGAGATAAAGCTGGCTTTATCTAAGTTGAAAGAGGATCCGCTAATGTCACTGAAAAACTTGCCAAATCTACTGAAGCTCAGTATGTGGGACAACGCCTACGATGGTGAAATTTTGCATTTTCAATATGGAGGGTTTCTAAAGTTGAAGAAACTGAACCTCAGTCGCATGAATAGACTGAATTTTCTGAGAGCATTGATCCAGACAAAGGACAACACTACTGGATTATCAAGCATGTACCTTTTGTATTCATTCGCCACTGGATTGGTCCAAACTTACTTGATTTTGATAGTCGCACCATTCACTCGTCGTCCTAGGAGTCACAAACAAACTGAGAGTGCTCTGGTGTATAGAAAACTTCAAAACATAAAGAAATTTGGATTCTCCATGTTACAACTCAAAGATGGTGTATTCTGTTCTTCATTCCATCTATGGTGCTTGAATTCAAAAGATTTCCTTCTCATCCTGCAATTGTCAAGGAAAATGTGGATTCAGTTCACCGCGTAA 5778 0.3879 MAETAVLFALGEVFQFLKEETNLLRGVHNDFSDIKDELESIQVFLKDADRRAADEADTKDGIRTWVKQLREASFRIEDVIDEYIRLMYRDNPTGCGSLVCKIPSLIKNLIPHHQIVSEIHDIKLSIRGIKERSERYNFQISHEPGLSSRSSSMREIENGRWRDPRLSSLFIEETETVGIEGPKEELSGWLLDGSVERTAISVVGMGGLGKTTLAKLVFDNQKVSAHFDCRACVTVSQSYTVRGLLINMMEQFCRGTEDPLPQMLHKMDDKSLIIEVRQYLQHKRFLILFDDAWQEDFSDQIEFSMPNNNKGSRIIITTRMMHVAEFFKKSFLVHVHKLKLLPPNKAWELFCKKVFRFELGGHCPPDLEAESREIVQKCKQLPLAIVAIGGLLSTKSKTLIEWKKVSQNLSLELGRNAHLTSLTKILLLSYDGLPYYLKPCILYFGLYPEDCVINHRRLIRQWIAEGFVKLEERRTPEQVAEEYLSELIQRSLVQVSNVGFEGKVQTCQVHDLLREVMIRKMKDLSFCQCVHEDSESIAVRKTRRLSIAMSPNNVFRSTNNSHFRAIHVFGNGGSLEHFICMLCSQSRILKLLDMQGTSLNHIPKNLGNLFHLRYINLRNTKVKTLPKSVGELQNLETLDLRETLVHALPSEINKLRKLRHLLAFLRNYEEKYSVLGFTTGVLVEKGIKNLTSLQNIYYVDVDHGGVDFIEEMKMLKQLRKLGLKLVRREHGNAISAAVVEMQHLESLNITAISEDEIIDLNFVSIPPKLQRLHLQARLERLPDWIPKLECLVKIRLGLSKLNVDPMQSLKNLPNLLKLSLWENAYDGEILHFQNGGFQKLKELILSHLNAVNSILIENGALLSLEHLKMEKIPQLKEVPPGIEPLNKLKVIDLVDMPDEFVKSIDPDKGHSHRIIKHVPILASKDKEVQVLHENNVKIYKVKKHNTCQNDPNRITQKKQLAENVSEMAESAVLSAVGEVFQLLKKEKNLLQGVHTDFSDIKGELESIQVFLKDADRRAADEADTNDGIRTWVKQMREASFRIEDVIDEYLRKIHRYNPPGCGSLFGKIASLNKTFIPRHKIASEIQDIKLSIRGIKERSERYNFQISHDQGSSRGRNSTGETENGRWRDPRLSALFIEETEIVGFECPREQLFGWLLEGASERTVISVVGMGGIGKTTLAKLAFDSQKVTTQFDCRACIAVSQSYTVRGLLINMMEQFCRETQDPLPQMLHKMDDKSLIIEVRQYLQNKRYLIFFDDVWQEDFSDQVEFSMPNNNKGSRIIITTRMMQVADFFKKSFLVHVHNLQLLPPNKAWELFCTKVFRFEFGGQCPTELEVVSKEIVKKCKQLPLAIVAIAGLLSTKSKTMVEWKKVSQNLSLELGRNAHLTSLTKILSLSYDGLPWYLKPCIFYVGIYPEDYSINHKRLTRQWIAEGFVKSDERQTPEQVATEYLSELIHRSLVQVSTVGFEGKVKTCRVHDLFREVIIRKMKELSFCHCMQEDSESIEVGNTRRLSIATNPNSVLKSAKNSHFRAIHVFERDGSLEHLMGKMCSQSRILKVLDIQGTLLNRIPKTLGRLFHLRYINLSYTKVKALPKSVGELQNLETLDLRETLVQELPREINKLAKLRHLLAFHRNYEANYSLLGFTTGVRMEKGIKNMTSLQNLYYVEVDHGGVDLIQEMKMLRQLRRLGLRHVRREHGNALCAAVVEMKHLENLNITTITADETINLNCVSSPPQLQRLHLKAKLDALPDWIPKLEYLVEIKLALSKLKEDPLMSLKNLPNLLKLSMWDNAYDGEILHFQYGGFLKLKKLNLSRMNRLNFLRALIQTKDNTTGLSSMYLLYSFATGLVQTYLILIVAPFTRRPRSHKQTESALVYRKLQNIKKFGFSMLQLKDGVFCSSFHLWCLNSKDFLLILQLSRKMWIQFTA 1925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00200 1925 FunFam Probable disease resistance protein At1g61300 1128 1296 - -
Trre6g00200 1925 SUPERFAMILY L domain-like 552 900 - -
Trre6g00200 1925 Pfam NB-ARC domain 1150 1397 IPR002182 GO:0043531
Trre6g00200 1925 Pfam NB-ARC domain 180 431 IPR002182 GO:0043531
Trre6g00200 1925 CDD RX-CC_like 968 1097 IPR038005 -
Trre6g00200 1925 MobiDBLite consensus disorder prediction 1106 1126 - -
Trre6g00200 1925 FunFam Probable disease resistance protein At1g61300 162 330 - -
Trre6g00200 1925 Gene3D - 341 429 IPR042197 -
Trre6g00200 1925 Gene3D - 1307 1395 IPR042197 -
Trre6g00200 1925 FunFam Probable disease resistance protein At1g63360 1396 1485 - -
Trre6g00200 1925 Pfam Rx N-terminal domain 5 89 IPR041118 -
Trre6g00200 1925 Pfam Rx N-terminal domain 971 1056 IPR041118 -
Trre6g00200 1925 CDD RX-CC_like 2 131 IPR038005 -
Trre6g00200 1925 Gene3D Ribonuclease Inhibitor 1517 1846 IPR032675 -
Trre6g00200 1925 Gene3D Ribonuclease Inhibitor 557 921 IPR032675 -
Trre6g00200 1925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1126 1409 IPR027417 -
Trre6g00200 1925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 444 IPR027417 -
Trre6g00200 1925 Gene3D - 1132 1298 IPR027417 -
Trre6g00200 1925 Gene3D - 165 333 IPR027417 -
Trre6g00200 1925 PANTHER DISEASE RESISTANCE PROTEIN RP 33 864 IPR044974 GO:0006952
Trre6g00200 1925 SUPERFAMILY L domain-like 1475 1838 - -
Trre6g00200 1925 Gene3D - 4 116 - -
Trre6g00200 1925 Gene3D - 970 1082 - -
Trre6g00200 1925 MobiDBLite consensus disorder prediction 1106 1120 - -
Trre6g00200 1925 FunFam Probable disease resistance protein At1g63360 430 519 - -
Trre6g00200 1925 Gene3D - 1396 1487 IPR036388 -
Trre6g00200 1925 Gene3D - 430 521 IPR036388 -
Trre6g00200 1925 PRINTS Disease resistance protein signature 1245 1259 - -
Trre6g00200 1925 PRINTS Disease resistance protein signature 1344 1358 - -
Trre6g00200 1925 PRINTS Disease resistance protein signature 1596 1612 - -
Trre6g00200 1925 PRINTS Disease resistance protein signature 1165 1180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00200 Trre-Chr6 1457031 1465426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00200 1166 1628 WRKY Transcription Factor Family AT5G45050 24.725 2.77e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00200 K13457 - tpra:123915389 3090.06