Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00192 ATGAAAAAAACATCGAATCCGGACCATTTGTCTACGGCTAGGATAAGTCTTGGATCCAAAGGAAGCAAGATACAACTCTTAACTAACCATTTTAGAGTTGGCCTTAGCAAGAATGATGGCTACTTCTACCACTATAATGTTGCTTTATGTTATCAAGATGGACCCCTAGTTGAAGTGAAAGGTGCGAGGCAAAAAGTCATAGACAAACTTTGTGAAACGTATGACGTATTGAAAAACAAGAATTTTGCATATGATGGCGACCAAAGCTTATTCACTTTTGGTTCTCTACATCATAATAAACAAGAATTCATTGTTGTGTTAGAAGAAGTTTCATCAATGAGGGTTGGAAGCAACCCCAATGAAGTAGCCAAGAGAATGAAGCGTCAATCTCGATCCAAATCTTTTAAGGTTGAGATTACTTATTTAGCGAAAATCCCATTACAAGAGATTGAAAAAGTAGTACAAGGTCAAGAATTTGAGCATCATCAAGAAGTATTAAAGGTTCTAGACGTAATATTGAGCCAGAATGCAACAAAGCAGGGGTGTCTCCGTATTCGCCAATCATACTTTCATGATAATCCAAGGAATATTACTAATATTGATGGTGGTGTTCAATGTTGTCGCGGTTTCCATTCCAGCTTCAAAGTCACACAAAAGGGTTTATCTCTCAATGTTGATGTGTCAACTACATTACTTGTAAAGCCTGGTCCTGTAGTGGACTTCCTTCTCCAGAACCAAAATGTTCAGCAAACAAACTTGATTGATTGGACCAAGGCAAGAAGAATGCTGAAAAATATTAGAATCAAAGCTAACAATAGAGAGTACAAAATCACTGGACTAAGTGAGATGTCTTGCAGGGCACAAAAATTTTTAATTAAAAATGGAAATGATGTTAATGGTCAAGTGAAAATAAGTGAAATAACAGTTTATGAATACTACAAACACAAGAAAAATATTGAACTCCATTATTCTATTGATATGCCATGCATCAATGTTGGCAAACCAAAGAAGCCAACTTATTTTCCTATGGAGTTATGCACATTAGTCCCGTTACAACGATACACTAGGGTACTGTCAAATAAGCAAAGGGCTCAATTTATGTTGGAGTCAAGGACTAGTCCTCATGAAAGAAAAGAAGCTTTGCAATATTCTTTAAAAAACAGTAGATATGACTCTGAGCCTATGTTTCGCTCTTTCGGGATTACTATTGAACCTTGTTTTACTCAAGTCAATGGCCGTGTTTTGCAAGCTCCAACGCTTGTTGTCGGAAGTGGACATAACTTTTGTCCCCGAAATGGGAGCTGGAATTTCCATGATAAGAAACTAGTTGAACCTGTGGAGATTAAGCGTTGGGGCATTGTGAACTTTTCATCTCGGTGTGATATAAAACATTTGTGCAGTTTGATTAAAAAATGCTCTGAAATGAAAGGGATGGTCATACATCGTCCGTTCGATGTATTTGAAGAGGACAGTCGCTATAGGAGTGAATTGCCATCTTCTAGGGTTGCTAGAATGTATGAAAAGTTAAAGGCCAAGATGCCTGGACCCCCTATGGATCCTCCGGCTCAACTTCTTTTGTGTATCCTTCCGGTTAAGAATTGTGAGCTTTATGGTCCATGGAAAAGGAGATGTCTTGTTGATGAAGGAATTGCAACACAATGCATTGCTCCAACAAAAAATATTAATGATCATTACATTAATAATGTACTATTGAAAATTAATGCAAAGCTTGGTGGGATGAATTCTTTTTTGTTATCCGAAGTTACGCGTTCCATACCATTATTTTCTAACATACCTACATTGATTATTGGAATGGATGTTTCACATGGATCTCCATATCAGTTAAATGTACCATCCATTGCTGCGGTTGTGAGCTCGAGATATTGGCCTCAAATTTCACGTTACAAAGCTGTAGTCCGAGCACAGTCATCAAAAGTAGAGATGATTGCATCTCTATTCAAGCCTGTTTCAGATACTAAGGATGATGGTATCATTAGTGAGTTGCTTAAGGACTTTCGCGCAACTTCAGGAATGAAGCCTAAGCAAATTATAATTTTCAGGGATGGAGTGAGTGATTCACAGTTCAACCAGGTTCTCAACATTGAATTGGAAGAAATCATAAAGGCTTGCAAACATCTTGATGAAAATTGGTGTCCAAAGTTTACTGTGATTGTTGCACAGAAGAATCACCATACTAGATTCTTCAAACCCAATGCTCCACAAGAAAATGTTTCACCTGGAACTGTTATAGATAACACTATATGTAATCCCAAAAACAATGACTTTTACATGTGTGCACATGCTGGAAGGATTGGTACAAGTCGACCTACTCATTACCATGTTTTATTTGATGAAATTGGATTCTCAGCAGATAATTTGCAAGAATTAGTGCATTCTCTATGTTATGTGCACCAGAGGAGCACAAATGCCATATCAATAGTTGCACCAATATATTATGCTGACCTAGCAGCTGCTCAGATGGCACAATTTATAAAATTTGATGAGTCGGAGACTCTTTCCAGCCACAATGAATCCACCTCTGCAGATATATCTCAAGTTCTTGAGTTACCACGTCTTCATGAACGAGTGGCCAATACTATGTTTTTTTGTTAG 2613 0.3758 MKKTSNPDHLSTARISLGSKGSKIQLLTNHFRVGLSKNDGYFYHYNVALCYQDGPLVEVKGARQKVIDKLCETYDVLKNKNFAYDGDQSLFTFGSLHHNKQEFIVVLEEVSSMRVGSNPNEVAKRMKRQSRSKSFKVEITYLAKIPLQEIEKVVQGQEFEHHQEVLKVLDVILSQNATKQGCLRIRQSYFHDNPRNITNIDGGVQCCRGFHSSFKVTQKGLSLNVDVSTTLLVKPGPVVDFLLQNQNVQQTNLIDWTKARRMLKNIRIKANNREYKITGLSEMSCRAQKFLIKNGNDVNGQVKISEITVYEYYKHKKNIELHYSIDMPCINVGKPKKPTYFPMELCTLVPLQRYTRVLSNKQRAQFMLESRTSPHERKEALQYSLKNSRYDSEPMFRSFGITIEPCFTQVNGRVLQAPTLVVGSGHNFCPRNGSWNFHDKKLVEPVEIKRWGIVNFSSRCDIKHLCSLIKKCSEMKGMVIHRPFDVFEEDSRYRSELPSSRVARMYEKLKAKMPGPPMDPPAQLLLCILPVKNCELYGPWKRRCLVDEGIATQCIAPTKNINDHYINNVLLKINAKLGGMNSFLLSEVTRSIPLFSNIPTLIIGMDVSHGSPYQLNVPSIAAVVSSRYWPQISRYKAVVRAQSSKVEMIASLFKPVSDTKDDGIISELLKDFRATSGMKPKQIIIFRDGVSDSQFNQVLNIELEEIIKACKHLDENWCPKFTVIVAQKNHHTRFFKPNAPQENVSPGTVIDNTICNPKNNDFYMCAHAGRIGTSRPTHYHVLFDEIGFSADNLQELVHSLCYVHQRSTNAISIVAPIYYADLAAAQMAQFIKFDESETLSSHNESTSADISQVLELPRLHERVANTMFFC 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00192 870 Coils Coil 696 716 - -
Trre6g00192 870 SMART PAZ_2_a_3 236 372 IPR003100 GO:0005515
Trre6g00192 870 Pfam Piwi domain 525 832 IPR003165 GO:0003676
Trre6g00192 870 Pfam Argonaute linker 1 domain 185 231 IPR014811 -
Trre6g00192 870 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 18 834 - -
Trre6g00192 870 FunFam Protein argonaute 3 592 870 - -
Trre6g00192 870 Gene3D paz domain 229 354 - -
Trre6g00192 870 CDD PAZ_argonaute_like 235 349 - -
Trre6g00192 870 Pfam N-terminal domain of argonaute 23 173 IPR032474 -
Trre6g00192 870 SUPERFAMILY Ribonuclease H-like 519 830 IPR012337 -
Trre6g00192 870 CDD Piwi_ago-like 394 826 IPR045246 -
Trre6g00192 870 SMART Piwi_a_2 524 832 IPR003165 GO:0003676
Trre6g00192 870 Pfam Argonaute linker 2 domain 376 421 IPR032472 -
Trre6g00192 870 SMART DUF1785_2 183 235 IPR014811 -
Trre6g00192 870 FunFam Protein argonaute 7 230 354 - -
Trre6g00192 870 Gene3D - 591 870 IPR036397 GO:0003676
Trre6g00192 870 ProSiteProfiles Piwi domain profile. 524 832 IPR003165 GO:0003676
Trre6g00192 870 Gene3D - 414 585 - -
Trre6g00192 870 SUPERFAMILY PAZ domain 230 390 IPR036085 GO:0005515
Trre6g00192 870 ProSiteProfiles PAZ domain profile. 273 350 IPR003100 GO:0005515
Trre6g00192 870 Pfam PAZ domain 239 366 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00192 Trre-Chr6 1411917 1417312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00192 14 870 Eukaryotic Initiation Factors Gene Family AT5G43810 34.228 2.60e-156 481