Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00188 ATGGATATAGATCTCAGGTTACCCTCTGGTGAACATGATAAAGAGGAAGAAGAAACAACTACACTTGATAACATGTTGGAAGGTGAAGAAAAATTGCACAATGGAGGTATTGATGGCAGGCATATGGTTGATGCTGGCATCGAAGTACATGCTCTAAATGGTGGAGATTTGAATTCCCCCACAGTTGATATGGTAATGTTCAAGGAAGATACAAATCTTGAACCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTCATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACAAAAAGAGAGTATGATAAATCCTTCAATCGACCACGAGCAAGACAGAACAAGCAAGAATCTGAAAATTCAACTGGTCGAAGATCTTGCTCTAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCCAGATGGGAAATGGGTTATACATAGCTTTGTGAAGGAACATAATCACGAGCTTTTACCTGCCCAGGCAGTAAGTGAGCAAACAAGACGAATGTATGCTGTGATGGCCAGGCAGTTTGCAGAATACAAAACTGTGGTTGGTATCAAGAATGAAAAGAATCCGTTTGATAAAGGTCGGAATTTTGGTCTGGAGTTTGGGGAGGCTAAACTTATGCTTGATTTTTTTGTTCAGATGCAAAGCATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGTCTGAAAAACCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTGTCATTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGGGTGAACCAGCACTATCAATTTATATTACTTGGGTGTGCCTTAATATCAGATGAAAGTGCCGCAACATTTTCGTGGCTACTACGGACGTGGCTGAAAGGTGTTGGTGGCCAAGTTCCAAAAGTGATAATTACGGACCATGACATGACTTTGAAGTCAGTTATTTCAGATGTATTTCCTAGTGCTTGCCATTGTGTTTGCCTATGGCATATACTGGGGAAGGTATCTGAAAATTTTGCTCATGTAATTAAAAAACATGCGAATTTCATGGCAAAATTTGAAAAATGTGTATTTCGGTCATTAACCAGTGATGATTTTGACAATAGATGGGAGAAAATTTTGGATAGATTTGAGCTTCGACAGGATGAATGCATGCAGTCTTTGTATGAAGATCGCAAGTTATGGGCACCAACATTCATGAAGGATGTGTTTTTAGGTGGCATGTCTACTCCCCAACGATCTGAAAGTGTAAATTCATTCTTTGACAAATATGTTCACAGGAAGACCTATGTACAAGATTTTGTTAAACAGTATGAAACCATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAACAAAGTAGCAACATTAAAAACTCCTTCACCTTTAGAAAAGAGTGTTGCAGGGATTTGCACCCATACAGTATTCAAGAAGATTCAAGCTGAGATTATTGGTGCAGTGGCTTGTCATCCTAAACTTGACAGGCAGGATGAGACAATTGTTATTCACAGGGTGCATGATATGGAAACAAGAAAAGACTTTTTTGTTGTGGTGAATGAAGTAAATTCAGAGTTGTCTTGTATATGTCGGCAATTTGAATATAAAGGTTATCTTTGTCGACATGCATTAGTGGTTCTTCAATATTCTGGCCATTCAGTGTTCCCATCTCAATATGTTTTGAAACGGTGGACAAAAGATGCAAAGATCAGAAATGTAACGGGGGAAGAATCTGAACATATGCTGGCTAGGGTGCAACGGTACAATGATTTATGTCATCGCTCACTAAAACTGAGCGAAGAGGGATCATTGTCTCAAGATAGTTATGGTATTGCATTCCATGCACTAAATGAGGCGCACAAAAGTTGTGTCAGTGTTAACAATTCTAGCAAGAGTCCTACCGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCATTGAAGAAGATACTCAAAGTAGAAATATGGGAAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCAGAGGCAGAAGTGATGACTGTCGGGGCACTAGACAACTTGCAACAAATGGACAAATTCAGCACAAGAGCTGCTGTACTTGAAGGTTATTATGGCACACAACAGAGTGTGCAGGGAATGTTGAACTTAATGGGACCAACACGTGATGATTACTACGGGAATCAACAGACTCTTCAGGGACTGGGACCGATAAATTCCATACCAACCAGCCACGATGGTTATTATGGTGCACATCAAAGCATGCCCGGTTTGGCACAACTGGATTTTTTGCGAACTGGTTTCACATATGGAATTAGGGATGATCCTAACGTGAGAGCAGCACAGTTACACGAGGATCCATCAAGACACGCGTGA 2529 0.397 MDIDLRLPSGEHDKEEEETTTLDNMLEGEEKLHNGGIDGRHMVDAGIEVHALNGGDLNSPTVDMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAVMARQFAEYKTVVGIKNEKNPFDKGRNFGLEFGEAKLMLDFFVQMQSMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESAATFSWLLRTWLKGVGGQVPKVIITDHDMTLKSVISDVFPSACHCVCLWHILGKVSENFAHVIKKHANFMAKFEKCVFRSLTSDDFDNRWEKILDRFELRQDECMQSLYEDRKLWAPTFMKDVFLGGMSTPQRSESVNSFFDKYVHRKTYVQDFVKQYETILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHTVFKKIQAEIIGAVACHPKLDRQDETIVIHRVHDMETRKDFFVVVNEVNSELSCICRQFEYKGYLCRHALVVLQYSGHSVFPSQYVLKRWTKDAKIRNVTGEESEHMLARVQRYNDLCHRSLKLSEEGSLSQDSYGIAFHALNEAHKSCVSVNNSSKSPTEAGTSGAHGQLSIEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMDKFSTRAAVLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPINSIPTSHDGYYGAHQSMPGLAQLDFLRTGFTYGIRDDPNVRAAQLHEDPSRHA 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00188 842 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 677 IPR031052 GO:0006355
Trre6g00188 842 MobiDBLite consensus disorder prediction 678 706 - -
Trre6g00188 842 Pfam SWIM zinc finger 569 602 IPR007527 GO:0008270
Trre6g00188 842 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Trre6g00188 842 MobiDBLite consensus disorder prediction 132 165 - -
Trre6g00188 842 Pfam MULE transposase domain 288 380 IPR018289 -
Trre6g00188 842 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Trre6g00188 842 SMART 26again6 579 606 IPR006564 GO:0008270
Trre6g00188 842 MobiDBLite consensus disorder prediction 678 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00188 Trre-Chr6 1387677 1391126 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre6g00188 FAR1 2.4e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00188 - - cam:101505784 1611.28