Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00186 ATGTCACCACCATTTTCTCTCACTCTTTCTCTTGTCTTTTTCATTCTCTTAGCACCATTGTTACTCCTAGCTCAATCTCCTTCCCCTTCTACTTCTCCTCCACCTTCTAATTCTTCATCTGCCGCGTGCAAAGCGACATTGTATCCGAAACTATGTCGCTTGATGCTATCTACTATCCGTTCATCGCCTTCCGATCCATATAACTATGGAAAATTCTCCATAAAACAAAACCTAAAACTAACAAGAAAACTAGCAAAAGTATTTTCTGATTTCCTCAAACGTCATCAATCATCTTCATCTTTAAACCATGAAGAGTTTGGTGCATTAGTTGATTGCAATGACCTTAACAAACTCAATGTAGATTACTTAGAATCCATATCTGATGAACTCAAATCAGCTACTACTTCATTATCAGATACAGAACTTGTTGATAAAATTGAAAGCTATCTTAGTGCTGTTACTACTAATCATTATACTTGCTTTGATGGGTTGGTTGTGACAAAAAGTAACATTGCTAATGCTCTTGCTGTTCCATTGAAAGAGGCTACACAATTTTATAGTGTTTCACTTGGTTTGGTCACTGAGGCTTTGAACAAAAACTTGAAAAGGAATAAGACTCGCAAACATGGTCTTCCTAATAAGTCATTCAAAGTTAGGCAACCACTTGAGAAGCTCATCAAGTATCTCCGCACAAAATATAGTTGCAAAACAACATCAAATTGTACAAGTACTACAAGAACTGAAAGGATTCTTAAAGAAAGTGAAAGCCAAGGAATTCTATTAAATGATTTTGTGATTGTGAGTCCTTATGGGATAGCTAACCACACTTCCATTGGAGATGCTATTACTGCTGCACCAAATAACACAAAGCCACAAGATGGTTATTTTCTTATCTATGTTAGAGAAGGATACTATGAGGAATATGTAATTGTTCCTAAGGAAAAAAAGGGTATTCTTCTAGTTGGAGATGGTATTAACAAGACAATTATCACAGGGAACCATAGTGTCATTGATGGTTGGACAACTTTCAACTCTTCCACCTTTGCTGTTTCTGGTGAAAGATTTATAGCAGTGGACATTACATTCAAAAACACAGCTGGTCCTGAAAAACATCAAGCAGTAGCAGTGAGAAACAACGCCGACCTATCGACATTCTACCGATGCAGTTTCGAAGGATATCAAGACACACTTTATGTTCACTCATTAAGACAATTCTATAGAGATTGCAAAATCTATGGTACAGTCGACTTCATTTTCGGCAACGCAGCTGTAGTTTTCCAAAATTGCAACATCTATGCTAGAAAACCAATGGAAAATCAGAAAAATGCTGTGACAGCACAAGGAAGAACTGATCCAAATCAAAACACTGGAATTTCAATCCAAAACTGTACTATTGATGCTGCACCTGATTTGGCTAATGACTTGAATTCGACGTCGAGTTACTTAGGTAGACCTTGGAAGATTTATTCAAGAACTGTTTATATGCAATCATATATTGGTAATTTTGTTGATCCTTCTGGTTGGTTAGAGTGGAATGGAACACTTGGATTAGACACTATATTTTATGGTGAGTTTAATAACTATGGACCTGGTTCTATAACTGATAATAGGGTACAATGGCCTGGTTATTTTCTTTTGAATGATACTCAAGCTTGGAATTTCACTGTTCTTAACTTTACTTTGGGAAATACTTGGCTTCCTGATACAGATATACCCTACACTGAAGGATTGCTGAAGTAG 1740 0.3655 MSPPFSLTLSLVFFILLAPLLLLAQSPSPSTSPPPSNSSSAACKATLYPKLCRLMLSTIRSSPSDPYNYGKFSIKQNLKLTRKLAKVFSDFLKRHQSSSSLNHEEFGALVDCNDLNKLNVDYLESISDELKSATTSLSDTELVDKIESYLSAVTTNHYTCFDGLVVTKSNIANALAVPLKEATQFYSVSLGLVTEALNKNLKRNKTRKHGLPNKSFKVRQPLEKLIKYLRTKYSCKTTSNCTSTTRTERILKESESQGILLNDFVIVSPYGIANHTSIGDAITAAPNNTKPQDGYFLIYVREGYYEEYVIVPKEKKGILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDITFKNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCKIYGTVDFIFGNAAVVFQNCNIYARKPMENQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLANDLNSTSSYLGRPWKIYSRTVYMQSYIGNFVDPSGWLEWNGTLGLDTIFYGEFNNYGPGSITDNRVQWPGYFLLNDTQAWNFTVLNFTLGNTWLPDTDIPYTEGLLK 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00186 579 Gene3D - 263 579 IPR012334 -
Trre6g00186 579 Pfam Pectinesterase 265 562 IPR000070 GO:0030599|GO:0042545
Trre6g00186 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 194 IPR035513 -
Trre6g00186 579 FunFam Pectinesterase 260 577 - -
Trre6g00186 579 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Trre6g00186 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 196 IPR035513 -
Trre6g00186 579 PANTHER PECTINESTERASE 16 567 - -
Trre6g00186 579 SMART PMEI_2 34 192 IPR006501 GO:0004857
Trre6g00186 579 Pfam Plant invertase/pectin methylesterase inhibitor 40 191 IPR006501 GO:0004857
Trre6g00186 579 CDD PMEI-like_3 41 195 - -
Trre6g00186 579 NCBIfam pectinesterase inhibitor domain 9 187 IPR006501 GO:0004857
Trre6g00186 579 SUPERFAMILY Pectin lyase-like 263 576 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00186 Trre-Chr6 1371347 1375722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00186 5 578 Carbohydrate Esterase AT3G10720 57.236 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00186 K01051 - gmx:100816503 927.161