Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00185 ATGTCTTCCTTCAAATCCTATGGAAAAGTTAATGAACTTGATCAAATGATGTTAGAAGCAAAGAGAAAAACAAGAAAGAGAATTACAATCATAGGTTTATCTTCAATAATCTTTATTGGTGTTGTAATTGGAGCTGTATTTGGAGTTGTTAACAACAACTCAAAAAATGATCATGACAATAATGCATCACAAAATTCATTGACTAATTCTATGAAAGCTGTTTGTGATGTAACATTGTACAAGGATTCGTGTTACGAGAGTCTTGGCTCTGTCGTAAACTCGGGTAAAGATGTTCAACCTGAAGAGTTGTTTAAATTGTCTATTAATGTGGCATTAACACATGTCTCTAAAGTTATTGAGTATTTCAATGATCATGGTGTTTTCAAAAATTTGATTGGTAATGATAGTAAGAATAAGGAAGCTTTGAAAAATTGTAGGGATCTTTTGGACCTTGCTGTTGACCATTTGAATAACTCATTGACTACTTCAGGGGAAAATTCTTCACTTTTTCAAGTTTTTGATGATCTACAAACATGGTTAAGTGCTGCAGGTACATACCAACAAACATGCATTGAAGGCTTTGAGGATACAAAAGAAGAACTTAAGAAAAGTGTAGTAAGCTATCTTAAAAATTCTACAGAATGCACAAGCAACAGTCTTGCCATAATTACATGGATTAACAAGGTTTCAAACACTCTCAATTTGAGGCGGTTAATGAGTTTACCTTATGAAAATGAATCACCAAAATGGCTTAATTCAAAAGATAGGAAACTTCTTGTGACAAAGGATTTGAGATCAAAAGCTGATATAGTTGTTGCCAATGGTAGTGGGAAATATAAAACTATATCTGAAGCAATTAAACATGTTCCTAATAAGAGTAATAAGAGGACTTTGATTTATGTGAAGAAAGGGATTTACTATGAGAATGTTAGAGTAGAGAAGACAAAATGGAATGTTATGATTATTGGTGATGGTATGACTGCTTCAGTTGTTTCTGGTAGGCTTAATGTTGTGGATGGCACACCAACATTTTCATCTGCAACATTTGCTGTATTTGGAAGGAATTTCATAGCTAGAGACATGGGTTTTCGCAATACAGCAGGTCCACAGAAGCACCAAGCAGTAGCACTAATGACAAGTGCTGATCAATCAGTTTACTATAAATGTCACATTGATGCTTATCAAGACACTCTTTATGTTCATTCCAATCGCCAATTCTATAGAGAATGTAACATTTATGGAACAGTTGATTTCATTTTTGGAAATTCAGCAGCTGTTATTCAAAACTGTAACATTTTGCCAAAGTTACCTATGCATGGACAACAGAACACAATCACAGCACAGGGAAAAACTGATCCTAACATGAACACAGGTATCTCAATTCAATATTGTAACATTGCACCTTTTGGAAACTTGAGTACTGTCCAAACATACCTTGGAAGACCATGGAAGAATTACTCAACCACAGTATACATAAGATCAAGAATGGAAGGTTTTATTAATCCAAAGGGTTGGTTACCATGGGTAGGGAACTCAGCACCAGACACTATTTTTTATGCAGAATTTCAGAACGTTGGACCAGGTGCTTCAACAAAAAATAGAGTGAAATGGAAGGGTTTGAAAAATATTAGTATTAAACAAGCTAATAAGTTTTCAGTTAAGGATTTTATTCAAGGTGATAGATGGATTCCTGCATCAAGTTCACCTTTTAAGGCTAATATATGA 1725 0.342 MSSFKSYGKVNELDQMMLEAKRKTRKRITIIGLSSIIFIGVVIGAVFGVVNNNSKNDHDNNASQNSLTNSMKAVCDVTLYKDSCYESLGSVVNSGKDVQPEELFKLSINVALTHVSKVIEYFNDHGVFKNLIGNDSKNKEALKNCRDLLDLAVDHLNNSLTTSGENSSLFQVFDDLQTWLSAAGTYQQTCIEGFEDTKEELKKSVVSYLKNSTECTSNSLAIITWINKVSNTLNLRRLMSLPYENESPKWLNSKDRKLLVTKDLRSKADIVVANGSGKYKTISEAIKHVPNKSNKRTLIYVKKGIYYENVRVEKTKWNVMIIGDGMTASVVSGRLNVVDGTPTFSSATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQSVYYKCHIDAYQDTLYVHSNRQFYRECNIYGTVDFIFGNSAAVIQNCNILPKLPMHGQQNTITAQGKTDPNMNTGISIQYCNIAPFGNLSTVQTYLGRPWKNYSTTVYIRSRMEGFINPKGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLKNISIKQANKFSVKDFIQGDRWIPASSSPFKANI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00185 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 227 IPR035513 -
Trre6g00185 574 NCBIfam pectinesterase inhibitor domain 64 226 IPR006501 GO:0004857
Trre6g00185 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 226 IPR035513 -
Trre6g00185 574 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Trre6g00185 574 SMART PMEI_2 66 222 IPR006501 GO:0004857
Trre6g00185 574 Pfam Plant invertase/pectin methylesterase inhibitor 70 222 IPR006501 GO:0004857
Trre6g00185 574 PANTHER PECTINESTERASE 42 564 - -
Trre6g00185 574 SUPERFAMILY Pectin lyase-like 266 570 IPR011050 -
Trre6g00185 574 Gene3D - 265 574 IPR012334 -
Trre6g00185 574 FunFam Pectinesterase 263 574 - -
Trre6g00185 574 CDD PMEI-like_3 73 228 - -
Trre6g00185 574 FunFam Pectinesterase 67 227 - -
Trre6g00185 574 Pfam Pectinesterase 270 560 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00185 Trre-Chr6 1366033 1370501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00185 7 574 Carbohydrate Esterase AT3G10710 57.268 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00185 - - gmx:100811152 890.567