Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00170 ATGAATACATCTGTCAATACGTGTGAGATCGTTGAGTTAAGGGAAGAGATATTTTCCGAGTTTGAAACAGATGGAAAACCTGAGAGTAGTTGTTCGTACAAATCAGGAAAAAGGTACTCGATTGAGGATGATATTAACCGTCTTTTCCAAGCTATTGAGATTAAAAGTTCATCAAGAGGTCATAGTATATCGAGGTTGCAAAAGAGTGCTCTTAAAAGACCGATCAGAGTCTGTCCGTCTCAGGCATCGGGAATTGGCATCGCGGAGCCTGTAAGTTTGAAACAGGCACTTAGAGGATTGTGCATCTCTCAGGCATCAGAAATGGCTGCTTTGAAGAGACCATCAAAGCAATGCACCTCATCTAGAGTATCAGAGGTTAGCACGGTAAAAAAGTTGGTTGAAATCTCCCTAGTGCCGGAGATATCTACGCCTTATGGTAAATTTCCTGATGTAGCAATATCAAGCTCAAGTGCTAACCATTTCATTCCTGTTGTCAATGATGCGAGCTCAAAAGAAATGACAACTAGTTTTGTGTCCCGACATCAGATCATACGTCTTCCATCCGAGGTTGAAGCTGGGAACCCAACAATAAAAACCGAGGAAGTGCTAGAGATCAGAACGCATCCTGCCACATCGAGTAAATCTTGTCTTGATTCTTCAACACTGGATAAGAACCGGGAGGAAAATTCGCATTGTGCATCTTGTCCATCCAACACTAGAAATGATGGTGGAGTCGACAAATCCTCAAGCATTAGTACATGTTTGGCAAAGCCAATATTCAATAACATGAACTTTTTTAAGAAAAAGGTAAAGAAAGACCTATGTTCGCCCTCGAGCTGCGCTACTAGTAGTTTTGACAAGGGGAATGGAAATTCTGATCTTAAGCATGAAGTGAAAGAAAATGATAAACAATCTCCGTGCAGTTCGAGTCATAGCATTGAAGTTAACTCAGTTAATGTTAGTAGAGATTCAAGTAAACCTAGTTCCAGTTTGAATTGCAATAAGAAAACCAAGTTTCTTGTTACAAAAGTTGATGAAAAATCAAGATCGAAGGAAAAGGGTGAGTTCTCGCAGAACTCAAAAAGTAGCATGGGTGAGTATAGTACTAGTAGCACAAGCATCAGTGAGGAGAGCAATTTTAGCGGTTCAAGTCGCAGTGGACAACGACCGCACATGTCAAAACACTCGAGATGGGAAGCTATTCGTGTGGTTCAACAGCAGCATGGTAACTTAAATTTGAGGCATTTCAGGATGCGAAGGAAGATCGGTAGTGGAGACATTGGAACTGTTTATCTTGCAGAACTAATTGGTACTAGCTGCCTTTTTGCACTGAAAGTTATGGACAATGAATTTTTGGCTAGCAGGAAGAAAACATTTAGGGTCCAAACCGAAAGAGAGATCCTTCAAATGCTGGATCATCCATTTCTTCCTACACTTTATTCGTATATCAATACGGATAAGCTCTCTTGCTTGGTCATGGAGTATTGTCCGGGCGGTGATCTGCATGTACTGCGACAGAAGCAAACATACAAGAGCTTTTCGGAGCAAGCAGCTAGGTTTTATGTTGCTGAAGTTCTTCTCGCCCTTGAGTATTTGCACATGATGGGAGTTGTATATCGAGATCTAAAGCCGGAGAATATCTTAGTACGCGAAGATGGACACATTATGCTGACAGATTTTGACTTGTCACTCAGATGTTCTGTTAATGCAATGTTAGTCAAATCATCTTCACCCGACGCCGATGCGACAAAGAAGATTTCAAGTCCTCCTTGTTCAGGGGCTAGCTGCATACACCCTTTTTGTCTCCAACCGGATTGGCAAGTTTCGTGCTTTACTCCTATTCTACTAAATCCAGGAGCGAAATCTCGGAAGATGAAGGCTGACTTAAGTGCTCAAGTTGGTCCACTGCCACAGCTTGTAGTTGAGCCTACCGATGCACGGTCTAACTCATTCGTTGGAACGTACGAATATCTTGCTCCAGAGATCATCAAAAGTGAGGGACATGGGAATGCTGTAGATTGGTGGACTTTCGGTATACTTTTGTTTGAGCTTTTATACGGAAAAACTCCCTTCAAAGGTCCATCAAACGATGATACATTATCCAACATCGTGTCGCAGAGCCTTAAGTTTCCAGGTACTCCTATAGTCAGTTTTCATGCAAGAGATTTGATCAAAGGATTGTTGATAAAGGATCCTGAAAATCGACTAGGCTCAATAAAAGGTGCTGCGGAAATTAAACAGCACCCTTTCTTTTTAGGCCTCAACTGGGCTCTAATACGGTGCGCAGCACCACCCGAGCTCCCCAAGTTTGGCGATTTTGGAACTAGTGCTTCATCTATGGCTACACATAAGGAGAATGCAAATGATTTAGAGGATATAGATGATTGTGAAGAGTTTGAGCTGTTTTAG 2409 0.4197 MNTSVNTCEIVELREEIFSEFETDGKPESSCSYKSGKRYSIEDDINRLFQAIEIKSSSRGHSISRLQKSALKRPIRVCPSQASGIGIAEPVSLKQALRGLCISQASEMAALKRPSKQCTSSRVSEVSTVKKLVEISLVPEISTPYGKFPDVAISSSSANHFIPVVNDASSKEMTTSFVSRHQIIRLPSEVEAGNPTIKTEEVLEIRTHPATSSKSCLDSSTLDKNREENSHCASCPSNTRNDGGVDKSSSISTCLAKPIFNNMNFFKKKVKKDLCSPSSCATSSFDKGNGNSDLKHEVKENDKQSPCSSSHSIEVNSVNVSRDSSKPSSSLNCNKKTKFLVTKVDEKSRSKEKGEFSQNSKSSMGEYSTSSTSISEESNFSGSSRSGQRPHMSKHSRWEAIRVVQQQHGNLNLRHFRMRRKIGSGDIGTVYLAELIGTSCLFALKVMDNEFLASRKKTFRVQTEREILQMLDHPFLPTLYSYINTDKLSCLVMEYCPGGDLHVLRQKQTYKSFSEQAARFYVAEVLLALEYLHMMGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNAMLVKSSSPDADATKKISSPPCSGASCIHPFCLQPDWQVSCFTPILLNPGAKSRKMKADLSAQVGPLPQLVVEPTDARSNSFVGTYEYLAPEIIKSEGHGNAVDWWTFGILLFELLYGKTPFKGPSNDDTLSNIVSQSLKFPGTPIVSFHARDLIKGLLIKDPENRLGSIKGAAEIKQHPFFLGLNWALIRCAAPPELPKFGDFGTSASSMATHKENANDLEDIDDCEEFELF 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00170 802 SUPERFAMILY Protein kinase-like (PK-like) 389 769 IPR011009 -
Trre6g00170 802 MobiDBLite consensus disorder prediction 305 332 - -
Trre6g00170 802 Gene3D Phosphorylase Kinase; domain 1 414 495 - -
Trre6g00170 802 MobiDBLite consensus disorder prediction 227 247 - -
Trre6g00170 802 FunFam Serine/threonine-protein kinase D6PK-like 414 499 - -
Trre6g00170 802 FunFam serine/threonine-protein kinase D6PK-like 646 769 - -
Trre6g00170 802 FunFam serine/threonine-protein kinase D6PK-like 500 567 - -
Trre6g00170 802 MobiDBLite consensus disorder prediction 357 389 - -
Trre6g00170 802 MobiDBLite consensus disorder prediction 290 304 - -
Trre6g00170 802 ProSiteProfiles Protein kinase domain profile. 416 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00170 802 MobiDBLite consensus disorder prediction 344 396 - -
Trre6g00170 802 MobiDBLite consensus disorder prediction 279 332 - -
Trre6g00170 802 SMART serkin_6 416 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00170 802 CDD STKc_phototropin_like 414 769 - -
Trre6g00170 802 Pfam Protein kinase domain 418 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00170 802 Pfam Protein kinase domain 648 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00170 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Trre6g00170 802 Gene3D Transferase(Phosphotransferase) domain 1 645 768 - -
Trre6g00170 802 MobiDBLite consensus disorder prediction 231 247 - -
Trre6g00170 802 PANTHER FLIPPASE KINASE 1-RELATED 252 770 - -
Trre6g00170 802 Gene3D Transferase(Phosphotransferase) domain 1 496 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00170 Trre-Chr6 1208882 1211450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00170 296 802 AGC Kinase Gene Family AT3G52890 60.811 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre6g00170 Pkinase 1e-38 CL0016