Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00163 ATGTCTATGTTACTAAGAAAAGTGTTGGAAATGTTAAGACGCAATCCAACATATTCAGATGAACAACAACAAGCGTTGTTTCCTCGTGGTGATTTGGGTGAATTGGATCAATTACCAAGTGACATATTGTTTCAAATTTTGAGACTTTTGGGTCCCAAAGAAGTTGCAAAGCTTACTGTGATTTGCAAGTCTTTGAGATTCTTTGTATCTGATAATCGTTTATGGCTTCACTTTCTTCAAACTCATCAATCTGATCCATCTTGGGATTCTGTATTTTTTGCTGAAACTAATTTGACCTCTGGTTACCCTCTTCCATCCCTTGTTGGCCAGAGACCTCAGTTGTCATTCAAACATATTTATGGCCAAAGAGAACAGGTTCCTGGTGCTATTATCATTGATGATTGGTCTTACAAATTTTTGTTCTGCGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATATGCTTGTCCATCGGGGCGATCCGCAACATTTTTGGAATTTGGCAACATTGAGTCGCCAATGTACACTAGACTTCGACATTTTTTCGCGACAATTTATAACAGGATGCAAGTGAAACCAGATAAACAACCCGTTATTGTTTCTATACCAATATGCCATTATGAAGATACTGAATCAGCTAGAGCATCGAGACGACAACTTAAAGAAGCAATTTATGCTTCCCTGTTTGACTTGAATGTTCCTTCTGTTTGTGCCGTCAGCCAGGCGACTCTAGCTCTGTATGCTGCGAAACGAACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTCACATCAGTAGTACCAATTTTTAATGGTAAAGTAATGCGCAAGGTCGGTGTGGAAGTTGTGGGACTGGGAGCACTGAAAGTTACAGGATTTCTTAAGGAGAAGATGCAACAGAACAACCTAAATTTTCAATCATTGTACACTGTACGCGCTTTGAAAGAGAATCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATTAAAACAAAACACACAAGCATCGTTTCAAGCTGCAGGAGATGGATGGTTTACTCTTTCAAAAGAGCGGTTTCAGACAGCAGAGGTTTTATTCAAGCCACATCTTGCTGGAATGCAAGCCATGGGTTTGCACCAGGCCATAGCTCTTTGTATGGAGCATTGCCATTCTGCAGAATTACCAGGCGATAATGATTGGTACAAGACTGTAGTTTTATCAGGGGGGACTGCATGTTTGCCGGGTTTGGCAGAAAGACTAGAGAAGGAACTCCATGCTTTACTTCCTCCATACATCTCCAATGGAATCAGAGTCATGCCTCCTCCATACGGTGTCGATACTCAATGGTTCGGAGCAAAGATGATTGGAAATTTGAGCACATTTCCTGGTCCGTGGTGTGTGGAAAAAAATAAGTTCCGCCAGAAGCCTAGGCTCGGCCTCATATGGTGA 1431 0.4116 MSMLLRKVLEMLRRNPTYSDEQQQALFPRGDLGELDQLPSDILFQILRLLGPKEVAKLTVICKSLRFFVSDNRLWLHFLQTHQSDPSWDSVFFAETNLTSGYPLPSLVGQRPQLSFKHIYGQREQVPGAIIIDDWSYKFLFCGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPDKQPVIVSIPICHYEDTESARASRRQLKEAIYASLFDLNVPSVCAVSQATLALYAAKRTSGIAVNIGFQVTSVVPIFNGKVMRKVGVEVVGLGALKVTGFLKEKMQQNNLNFQSLYTVRALKENLCYVALDYEAELLKQNTQASFQAAGDGWFTLSKERFQTAEVLFKPHLAGMQAMGLHQAIALCMEHCHSAELPGDNDWYKTVVLSGGTACLPGLAERLEKELHALLPPYISNGIRVMPPPYGVDTQWFGAKMIGNLSTFPGPWCVEKNKFRQKPRLGLIW 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00163 476 Pfam Actin 184 460 IPR004000 -
Trre6g00163 476 Gene3D - 242 441 - -
Trre6g00163 476 SUPERFAMILY Actin-like ATPase domain 251 460 IPR043129 -
Trre6g00163 476 SUPERFAMILY F-box domain 28 91 IPR036047 GO:0005515
Trre6g00163 476 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Trre6g00163 476 SUPERFAMILY Actin-like ATPase domain 142 257 IPR043129 -
Trre6g00163 476 Gene3D - 23 102 - -
Trre6g00163 476 SMART fbox_2 38 78 IPR001810 GO:0005515
Trre6g00163 476 Gene3D Actin; Chain A, domain 4 285 369 - -
Trre6g00163 476 SMART actin_3 127 466 IPR004000 -
Trre6g00163 476 PANTHER ACTIN 179 463 IPR004000 -
Trre6g00163 476 Pfam F-box-like 36 76 IPR001810 GO:0005515
Trre6g00163 476 Gene3D - 180 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00163 Trre-Chr6 1114716 1121367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00163 184 472 Cytoskeleton Gene Families AT3G12110 32.095 6.61e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00163 K16616 - gmx:100791973 762.296