Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00159 ATGACCGAACTCACAATCACAAACAAAAACCCTTATCCTCCTCCAACCGCTCTCTACTCTGACCTTGTTCATGATCCTAACCTCTTCATGGAAAAGCTTCAATCTTTTCATGATTCATTTGGTACCAAATTCAAGATTCCTACTATTGGGGGAAAGCCACTAGATCTACATCACCTTTTTGTGGAAGTAACATCTCGTGGTGGTATAGAAAAGGTGATTGTAGATCGTAAATGGAAGGAAGTAGTTATGTCCTTCAAGTTCCGAGAAACCATAACAAGCGCATCATTCATGGTGCGCAAGTTCTACCTATCGTTGCTGTATCACTTTGAGCAAGCGTATTATCTTTGCAAGCAAGTCCCTCCCTCACCACCTGATGCTATGAGTGGGAACCTTGCCAATAGCTCCACAACCAATAGAGAGGGTGCTGCTATCAATGATTCACCTGTTCAGGTCAATCCAGCACAGACACTTGGTTCTTTAGTGCGTGGAACAGTTGATGCGAAATTTGATGGTGGATATATAGTAACTGTGGACCTGGGTTCTGAACAGCTGAAAGGTGTCCTGTATCATGTTCCTAGTAATGCGTCTCAGAATTTTTATACCGAAGGTACGCGTACGCCTATTTCAAGGAATAGAAAGAAATCAAGATTGGCATTAAGTGATCCATATCGTCCGAAATCAAACAGGAATGGTTACAATTTCTTTTTTGCTGAGAATTATGCCAGGCTAAAGCCTTCATTTTATGGACAAGAGGGAGCACTTAACAAGAAAATTGGGGTTATGTGGAGAAGTCTGACAGACGCAGAAAGACAGTTTTATCGGGAGAAAGCGTTGAGAGATAAAGAAAGATACAGGATTGAAATGTTGAAGTACAAATCCAACAGTTCAACTCCTCAATAG 900 0.4144 MTELTITNKNPYPPPTALYSDLVHDPNLFMEKLQSFHDSFGTKFKIPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVVMSFKFRETITSASFMVRKFYLSLLYHFEQAYYLCKQVPPSPPDAMSGNLANSSTTNREGAAINDSPVQVNPAQTLGSLVRGTVDAKFDGGYIVTVDLGSEQLKGVLYHVPSNASQNFYTEGTRTPISRNRKKSRLALSDPYRPKSNRNGYNFFFAENYARLKPSFYGQEGALNKKIGVMWRSLTDAERQFYREKALRDKERYRIEMLKYKSNSSTPQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00159 299 Coils Coil 274 294 - -
Trre6g00159 299 Pfam HMG (high mobility group) box 225 292 IPR009071 -
Trre6g00159 299 CDD HMG-box_AtHMGB9-like 225 291 - -
Trre6g00159 299 SUPERFAMILY HMG-box 213 294 IPR036910 -
Trre6g00159 299 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 225 292 IPR009071 -
Trre6g00159 299 Pfam ARID/BRIGHT DNA binding domain 28 110 IPR001606 GO:0003677
Trre6g00159 299 SMART bright_3 24 115 IPR001606 GO:0003677
Trre6g00159 299 ProSiteProfiles ARID domain profile. 23 114 IPR001606 GO:0003677
Trre6g00159 299 SMART hmgende2 224 293 IPR009071 -
Trre6g00159 299 MobiDBLite consensus disorder prediction 200 223 - -
Trre6g00159 299 CDD ARID_HMGB9-like 25 110 IPR045303 GO:0003677
Trre6g00159 299 SUPERFAMILY ARID-like 23 120 IPR036431 GO:0003677
Trre6g00159 299 SMART ARID_2 20 110 - -
Trre6g00159 299 Gene3D - 20 123 IPR036431 GO:0003677
Trre6g00159 299 Gene3D High mobility group box domain 208 298 IPR036910 -
Trre6g00159 299 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00159 Trre-Chr6 1077100 1081421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00159 17 294 ARID Transcription Factor Family AT3G13350 51.761 1.06e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre6g00159 ARID 4.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00159 - - lja:Lj3g3v1933050.2 410.223