Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00149 ATGGCTGGGATTGATGAAAATCTTGCACTTAATGGTGATTGGGGTCTTCCTAGTCCAAGTCCAAGGGCCCTTTTTTCTAGAATGCTAGAAGAAGAAAACAATGTAATAAGACCAAATTCAGAACATCCTGGAAATGGTCGGACTGAGGCACAAGATGGTGATTCCGGTACAAAATTGAGCGACATGAGTTATCCGACTGAGCAAAAATCGAGCTCGCGGGGTGGTCTTGTTGAAAGAATTGCTGCTAGAACCGGATTTAATGCTCCAAGGCTGAATACAGAAAGCATTAGATCTACCGAACTTTCGCTCAATTCTGAGATTCAGTCTCCTTACTTGACTATACCACCTGGTCTTAGTCCTACTACACTTTTAGATTCTCCTGTGTTCCTTGTGAATTCATTGGCACAACCATCTCCAACAACAGGAAAGTTTCCGTTTGTTTCAAACGGCAACATTCGCTGCTCAGAATTATCATCCGATGTTCAAGAAAAATCTAAGCAGAATGGCTTTAATGATATTTATGCATCGTCCTTTGCTTTCAAGCCTACAACAGATTCGGGGCCCTCTTTTTATCATGGTGCTGGTAGAAATATAAATCCAACTACACTTTCTCAGCAATCCCTTCATGGTGTTGAAGCTTCAGTTCAATCTCAAAGAGTTGATCAGGTCAAAGTTCAAACTGAGAACAAAAGTAGCCTCCATCTTAAGGCAGAGTTCTCCAACTCTCCACCTCAAAAAGACAATTCTCCACCAATGGAAGAGCATGCAGATGAAGAGGGAGAACAAAGAGTCAACGTTGACTCGTTGGTTGCTGGTGTTGGTGGTACTCCATCGGAAGACGGATATAATTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGCGAGTACCCTCGAAGTTACTACAAGTGTACTCATTCAAATTGCCCAGTTAAAAAGAAAGTTGAACGTTCTCACGAGGGCCATATAACGGAGATAATCTATAAGGGGGCACATAACCACCCGAAACCTCCTCCAAGTCGCCGGGCAGGCATTGGGTCCACTAACCCCCATGCTGACATGCAAGTGGACAATCCTGAAGACGGTGAACCACAGGGTGGTGGCGATGGTGATCGTGGCTGGGCTAATTTACAAAAGGGAAATATAGCTGGAGCTGGTAATTGGAAGCATGACAACCTTGAAGCTGCATCATCTCTCAACCCCGAGTACGGTAACCAGTCTACCAATCTACAAACTCAAAATGGTACTGCTCACTTTGATTCAGGTGATGGAGTGGATGGCTCATCTACGTTTTCTAACGAAGGGGAAGATGATCAAGCTACTAATGGTAGTGTATCGTTAGGTTACGATGCGGAAGGGGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGTTGAAATGAGTGGAGCTACTAGAGCTATTCGTGAGCCTAGAGTTGTTGTGCAGACTACCAGCGAAGTAGATATCCTTGATGATGGTTATCGGTGGCGTAAATATGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACCGTAAGGAAGCATGTGGAGCGAGCATCACATGACCTTAAATCTGTGATCACTACATACGAGGGAAAGCACAATCACGATGTCCCCGCTGCTCGTTCTAGCAGTCATGTCAATGCGAATGCTTCTAATGCAGCTCAAGGGCAAGCTTCTGGTCTTCTTCAAAACCATGTTCATAGAACTGAACCATCTCAAATTCACAATGGCATGGGAAGGCCTTCATTTGGCTCATTCAACCTACCCGGAAGACAGCAGCTAGGTCACCCGCACGGCTTCTCCTTTGGAATGAATCAACACCTGTCGAACCTTGCAATGTCGGGATTAGGCTCTTCTTCGCAAGCAAAGTTTCCTGTAATGCCTATGAATCCATTCATGGCGCAACAACAACGCCCCACAAATGAAATGGGGTTCATGTTACCAAAGGGAGAACCAAATGTGGACGCTAATCCTGAACGCAGCGGCCTTAACATGCGTAATGGTTCGTCATCAATGTATCAAGATATTATGAATCACATGCCGCTTGGACCTCACATGTAA 2103 0.447 MAGIDENLALNGDWGLPSPSPRALFSRMLEEENNVIRPNSEHPGNGRTEAQDGDSGTKLSDMSYPTEQKSSSRGGLVERIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLVNSLAQPSPTTGKFPFVSNGNIRCSELSSDVQEKSKQNGFNDIYASSFAFKPTTDSGPSFYHGAGRNINPTTLSQQSLHGVEASVQSQRVDQVKVQTENKSSLHLKAEFSNSPPQKDNSPPMEEHADEEGEQRVNVDSLVAGVGGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRAGIGSTNPHADMQVDNPEDGEPQGGGDGDRGWANLQKGNIAGAGNWKHDNLEAASSLNPEYGNQSTNLQTQNGTAHFDSGDGVDGSSTFSNEGEDDQATNGSVSLGYDAEGDESESKRRKLESYVEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASNAAQGQASGLLQNHVHRTEPSQIHNGMGRPSFGSFNLPGRQQLGHPHGFSFGMNQHLSNLAMSGLGSSSQAKFPVMPMNPFMAQQQRPTNEMGFMLPKGEPNVDANPERSGLNMRNGSSSMYQDIMNHMPLGPHM 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00149 700 Gene3D WRKY domain 479 545 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 MobiDBLite consensus disorder prediction 549 571 - -
Trre6g00149 700 MobiDBLite consensus disorder prediction 250 264 - -
Trre6g00149 700 FunFam WRKY transcription factor 33 479 545 - -
Trre6g00149 700 FunFam WRKY transcription factor 267 338 - -
Trre6g00149 700 SUPERFAMILY WRKY DNA-binding domain 276 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 Pfam WRKY DNA -binding domain 279 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 Pfam WRKY DNA -binding domain 493 549 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 MobiDBLite consensus disorder prediction 327 463 - -
Trre6g00149 700 ProSiteProfiles WRKY domain profile. 487 552 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 124 569 IPR044810 GO:0003700
Trre6g00149 700 SUPERFAMILY WRKY DNA-binding domain 484 552 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 MobiDBLite consensus disorder prediction 1 75 - -
Trre6g00149 700 MobiDBLite consensus disorder prediction 224 265 - -
Trre6g00149 700 Gene3D WRKY domain 271 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 MobiDBLite consensus disorder prediction 554 571 - -
Trre6g00149 700 ProSiteProfiles WRKY domain profile. 279 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 MobiDBLite consensus disorder prediction 224 248 - -
Trre6g00149 700 MobiDBLite consensus disorder prediction 398 446 - -
Trre6g00149 700 SMART WRKY_cls 492 551 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 SMART WRKY_cls 278 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00149 700 MobiDBLite consensus disorder prediction 38 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00149 Trre-Chr6 1004055 1008168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00149 1 695 WRKY Transcription Factor Family AT5G56270 49.520 2.65e-177 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g00149 WRKY 3.5e-24 CL0274