Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00147 ATGTCATGTAAATTTTCACCAACAAGAACAACAACTGTTATTGTTCTTCATATGTTTGTTTCATTCATAACACTAACCTTAACAACATCAACAACAACAACAACAACAACAACAACAACCTTTGATTCAACAACGTTATTGTTAGACAATTTCAAACACTCAAACATAATTTCTGATCCAAAAAACTTCCTTTCAAATTGGTCACTTTCTTCTTCCCTTTGTTTATGGCAAGGTATCACTTGTTCACTTTCCGGCCAAATCACCACCGTTAACCTCACCGGAGCTTCACTTTCCGGTAAAAGTTTTAATCTTTTCACCTTCACTTCAATACCCACTTTACAAAATCTTCTCTTACATGGAAATTCTTTCACTTCTTTCAACCTCTCTGTTTCAAAACCCTGTTCTCTTATCACCCTTGATCTTTCTTCCACCAATTTCTCAGGAACTTTTCCTTTTGAAAATTTTGCTTCTTGTTATAGTCTTAGTTACCTCAATTTGTCTAGGAATTTGATAACTTCAACAAATAATAATTTTTTAGGGTTTGGCTCTTCTTTGATTCAACTTGATATGTCTAGAAACATGTTTTCTGATGTTGATTTTGTTGTTGAAGTTGTTACAAAGTTTGAAAGTTTGGTTTATGTTAATTTTTCTGACAACAGAATCTATAGTCAAATCAGTGATTCACTTGTTCCTTCTGTGAATTTGTCAACTTTGGATTTGTCTCATAATTTGTTGTTTGGAAAATTACCCTCTAAAATTGTTGGTGATAGTGTTGAAATTTTGGATCTTTCAAGCAACAATTTTTCATTAGGGTTTTCAGAGTTTGATTTTGGGGATTGTAAGAAACTTGTTTGGTTGAGTTTATCTCACAATGTGATATCTGATTTTGAGTTTCCACAGAGTTTGAAAAATTGTCAAGTGTTGGAAAGTTTGGATCTTTCTCAAAATAAATTTAAGATGAAGATTCCTGGTGTTGTTCTTGGTGAGTTGAAGAATTTGAAGGAACTTTATTTAGGGAATAATCTTTTTTATGGAGAAATATCTAAGGAGCTTGGAAGTGTTTGTGAGAGTTTGGAAATTCTTGATCTTTCTATGAATAAGCTTTCTGGTGAGTTTCCTTTGGTTTTTGGAAAATGTTCATCTTTGAAGAGTCTTAACCTAGCTAAGAATTTTCTATATGGTAATTTTCTTGAAAATGTTGTTAGCAAACTTTCTAGTCTTAGATATCTCTCTGTGTCATTCAACAACATAACCGGAAATGTTCCTTTGTCGATTGTTGCAAATTGTACACAACTTCATGTTCTTGACCTAAGTTCGAACGGTTTCACTGGCAATGTTCCTTCGATGTTTTGCCCTTCGAAATTGGAGAAGTTGCTTCTAGCTGATAATCACCTTTCAGGGAATGTTCCCGCAAAACTCGGTGAATGCAAGAGTTTGAGAACAATTGATTTTAGCTTCAATAATTTGAGTGGTTCAATACCTAAGGAAGTTTGGTTTTTGCCTAATCTTTCTGACTTGATTATGTGGGCAAATAGTCTCACTGGCGAGATTCCCGAAGGAATTTGTGTCAATGGAGGGAACCTCGAAACATTGATTCTTAACAACAATTTCATTTCTGGTTCAATTCCTAAGTCTATTGCAAACTGTACCAACATGATTTGGGTTTCGCTTGCTAGCAACCGTATTACCGGAGAAATACCTGCTGGTATCGGGAATCTGAACGAACTTGCTATTCTTCAATTAGGTAACAATTCTCTTGTTGGAAAGATTCCTCCCGACATTGGAATGTGCAAGAGATTAATATGGTTGGATTTGACTAGCAATAACCTCACCGGTACTATTCCGTCCCAGCTTGCGAATCAAGCTGGATTGGTTATTCCGGGGAGTGTTTCGGGTAAGCAATTTGCATTTGTGAGAAATGAAGGTGGTACTAATTGTAGAGGTGCCGGTGGACTAGTTGAATTTGAAGATATAAGGGCAGAGAGGCTTGAAAGTTTTCCTATGGTTCATTCTTGTCCATTAACAAGAATATATTCTGGTTATACAGTTTATACTTTTGCCACCAATGGAAGCATGATTTTCCTTGATCTTTCTTACAATTTCTTGTCAGGGACTATTCCAGAAAATTTAGGCGCAATGTCCTATTTGCAGGTCCTAAATCTAGGACACAATAGGCTCAATGGAAAAATTCCAGAAAGTTTCGGTGATTTAAAAGCTATAGGAGTGCTTGATTTATCACATAATAGCCTTCAAGGGTTCATCCCTGGATCATTGCAATCTCTATCATTTCTCAGTGACTTTGATGTGTCGAATAATAACCTTAGTGGATTGATTCCTTCTGGTGGTCAGTTAACAACTTTCCCGGCGTCTAGATATGCAAACAACTCCAACCTTTGTGGTGTTCCCTTACTGAAATGCGGTGCTTCAAATCACTCGGTAACTTTGCGTACGTCGAAGAAGAAGCAACCTATTGCAATTTTGATTGTCATTTCCCTCCTTTTCTTTCTCTTGTTTGTTGTTGTGGTTTCATTGGCTTTATATCGAGTTCGAAAGGCTCGGGAGAAGGATGAATTGAGGGAAAAATATGTAGAAAGTCTTCCGACATCTGGTACCAGTAGTTGGAAGCTTTCGACCTTTCCCGAGCCTCTGAGCATCAATGTCGCTACGTTTGAGAAGCCTTTGCGCAAGTTGACGTTCGCACATCTTCTCGAGGCTACCAACGGTTTCAGCTCTGAAAGTTTGATAGGTTCGGGAGGTTTCGGTGAAGTGTATAAAGCTAAGATGAAAGACGGCAGTGTTGTTGCTATCAAGAAACTCATCCGTGTCACAGGCCAGGGAGACAGAGAGTTCATAGCCGAAATGGAAACGATCGGGAAGATTAAGCACAGGAACCTTGTTCCACTACTTGGTTACTGTAAAGTTGGAGATGAAAGGCTACTTGTGTATGAGTACATGAAATATGGAAGTTTAGAAACTGTTCTACATGAGAGGATCAAAAGTTCAAAGCTTGCTTGGGAAACAAGAAAGAAAATAGCACTAGGATCAGCAAGAGGTCTTGCATTTCTTCATCATAGTTGCATACCTCATATTATACATAGAGACATGAAGTCAAGCAATATTCTTCTCGACGAAAATTTTGAAGCTAGAGTTTCGGATTTCGGTATGGCGAGATTGGTTAATGCACTTGACACTCATCTCACAGTTAGCACACTTGCAGGAACACCAGGTTATGTACCACCTGAATACTATCAAAGTTTTCGATGCACGGCAAAAGGCGACGTTTATAGCTATGGTGTCATACTGTTAGAACTTCTATCAGGGAAGAGACCGATCGATTCTTCCGAGTTCGGAGATGATAACAATCTTGTTGGATGGTCTAAGAAGCTTTATAGAGAGAGAAGAATTATTGAAATACTTGATCCTGATTTGGTTATGCTAACATCTAGCGAAGGCGAACTTTTTCAATATTTGAGAATTGCTTTTGAATGTTTAGAGGAAAGACCGTACCGACGTCCGACGATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAAGTTGATACAGATAATGATAGTGTTGTTGATGGTTTCTCTATGAAAGACACTGTTATTGATGAAACATGA 3624 0.3753 MSCKFSPTRTTTVIVLHMFVSFITLTLTTSTTTTTTTTTTFDSTTLLLDNFKHSNIISDPKNFLSNWSLSSSLCLWQGITCSLSGQITTVNLTGASLSGKSFNLFTFTSIPTLQNLLLHGNSFTSFNLSVSKPCSLITLDLSSTNFSGTFPFENFASCYSLSYLNLSRNLITSTNNNFLGFGSSLIQLDMSRNMFSDVDFVVEVVTKFESLVYVNFSDNRIYSQISDSLVPSVNLSTLDLSHNLLFGKLPSKIVGDSVEILDLSSNNFSLGFSEFDFGDCKKLVWLSLSHNVISDFEFPQSLKNCQVLESLDLSQNKFKMKIPGVVLGELKNLKELYLGNNLFYGEISKELGSVCESLEILDLSMNKLSGEFPLVFGKCSSLKSLNLAKNFLYGNFLENVVSKLSSLRYLSVSFNNITGNVPLSIVANCTQLHVLDLSSNGFTGNVPSMFCPSKLEKLLLADNHLSGNVPAKLGECKSLRTIDFSFNNLSGSIPKEVWFLPNLSDLIMWANSLTGEIPEGICVNGGNLETLILNNNFISGSIPKSIANCTNMIWVSLASNRITGEIPAGIGNLNELAILQLGNNSLVGKIPPDIGMCKRLIWLDLTSNNLTGTIPSQLANQAGLVIPGSVSGKQFAFVRNEGGTNCRGAGGLVEFEDIRAERLESFPMVHSCPLTRIYSGYTVYTFATNGSMIFLDLSYNFLSGTIPENLGAMSYLQVLNLGHNRLNGKIPESFGDLKAIGVLDLSHNSLQGFIPGSLQSLSFLSDFDVSNNNLSGLIPSGGQLTTFPASRYANNSNLCGVPLLKCGASNHSVTLRTSKKKQPIAILIVISLLFFLLFVVVVSLALYRVRKAREKDELREKYVESLPTSGTSSWKLSTFPEPLSINVATFEKPLRKLTFAHLLEATNGFSSESLIGSGGFGEVYKAKMKDGSVVAIKKLIRVTGQGDREFIAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEYMKYGSLETVLHERIKSSKLAWETRKKIALGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSSEFGDDNNLVGWSKKLYRERRIIEILDPDLVMLTSSEGELFQYLRIAFECLEERPYRRPTMIQVMAMFKELQVDTDNDSVVDGFSMKDTVIDET 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00147 1207 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 201 425 - -
Trre6g00147 1207 Pfam Leucine rich repeat N-terminal domain 54 82 IPR013210 -
Trre6g00147 1207 Pfam Protein kinase domain 910 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00147 1207 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515
Trre6g00147 1207 FunFam Serine/threonine-protein kinase BRI1-like 1 630 687 - -
Trre6g00147 1207 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 401 1183 - -
Trre6g00147 1207 FunFam Brassinosteroid LRR receptor kinase 985 1186 - -
Trre6g00147 1207 Gene3D Ribonuclease Inhibitor 176 807 IPR032675 -
Trre6g00147 1207 Gene3D Transferase(Phosphotransferase) domain 1 985 1201 - -
Trre6g00147 1207 SMART LRR_typ_2 573 597 IPR003591 -
Trre6g00147 1207 SMART LRR_typ_2 404 428 IPR003591 -
Trre6g00147 1207 SMART LRR_typ_2 330 354 IPR003591 -
Trre6g00147 1207 SMART LRR_typ_2 737 760 IPR003591 -
Trre6g00147 1207 SMART LRR_typ_2 761 784 IPR003591 -
Trre6g00147 1207 SMART LRR_typ_2 500 524 IPR003591 -
Trre6g00147 1207 SMART LRR_typ_2 713 736 IPR003591 -
Trre6g00147 1207 Pfam Leucine rich repeat 715 774 IPR001611 GO:0005515
Trre6g00147 1207 SUPERFAMILY L domain-like 54 348 - -
Trre6g00147 1207 SUPERFAMILY Protein kinase-like (PK-like) 893 1188 IPR011009 -
Trre6g00147 1207 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 686 806 - -
Trre6g00147 1207 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 426 626 - -
Trre6g00147 1207 ProSitePatterns Protein kinases ATP-binding region signature. 915 938 IPR017441 GO:0005524
Trre6g00147 1207 FunFam serine/threonine-protein kinase BRI1-like 2 870 984 - -
Trre6g00147 1207 SUPERFAMILY L domain-like 426 791 - -
Trre6g00147 1207 Gene3D Ribonuclease Inhibitor 40 149 IPR032675 -
Trre6g00147 1207 Gene3D Phosphorylase Kinase; domain 1 872 984 - -
Trre6g00147 1207 SMART serkin_6 909 1181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00147 1207 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Trre6g00147 1207 Gene3D - 630 687 - -
Trre6g00147 1207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1030 1042 IPR008271 GO:0004672|GO:0006468
Trre6g00147 1207 ProSiteProfiles Protein kinase domain profile. 909 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00147 1207 SUPERFAMILY RNI-like 257 520 - -
Trre6g00147 1207 Pfam Brassinosteroid receptor island domain 623 686 IPR045381 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00147 Trre-Chr6 989512 993135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00147 15 1206 Receptor kinase-like Gene Family AT1G55610 60.513 0.0 1434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre6g00147 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00147 - - gmx:100779072 1667.13