Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00130 ATGGCCAACAAACATCAAGGCAACAATTCTGTCTTGAAACTTTGTTGTTCATCAAACCGTGCTATAACCTTAATACAAAAAGTGATTGCAGAAATTATTGGTACATATTTTCTAGTCTTTGCCGGTTGTGGTGCTGTAGCAGTTAATAAAATCTATGGCTCAATCACTTTCCCAGGAATTTGTATCACTTGGGGTTTGATTGTAACCGTCATGTGTTACTCCGTTGGTCATATCTCCGGTGGCCTATTCAACCCGGCCGTTGCCATAACTTGGGCTATCTTTCGCCGAATAACAGTTATAGAAGCTCCACTTTATATCGCTGCTGAGTTACTTGGATCGACGCTAGCAAGTGTCACATTATCTCTAATGTTCGACATAACACCAAAATCTTATTTTGGAACCGTACCTGTTGGATCGGACGGTCAATCATTAGTTGTCGAAATAATTATAAGTTTTTTATTAATGTTTGTCATTTCAGCTGTTACAACAGATGATAGAGCCGTTGATGACTCCGCGAGTGTCGCGGTTGGAATGACAATAATGTTGAATCTTTTTATCGCCGGACCTGTATCAGGAGCATCAATGAATCCAGCAAGAAGTATTGGTCCTGCAATAGTGATACATATTTATAAAGGGTTATGGATATATATAGTTGGTCCAATTGTTGGAGCCATAGCTGGAGCACTTGCTTATAACTTTCTTAGATCGGTTTACAAGCCACCTTCAGAGTTATCAGCAGATAAGTCATCACCACCATCAGAATTAACAAAAGAAAAACCATCTTCAGAGTTAATTACACCAGAACAACCATTGAGGAGCATAGTTGTAGATTGA 834 0.3921 MANKHQGNNSVLKLCCSSNRAITLIQKVIAEIIGTYFLVFAGCGAVAVNKIYGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVAITWAIFRRITVIEAPLYIAAELLGSTLASVTLSLMFDITPKSYFGTVPVGSDGQSLVVEIIISFLLMFVISAVTTDDRAVDDSASVAVGMTIMLNLFIAGPVSGASMNPARSIGPAIVIHIYKGLWIYIVGPIVGAIAGALAYNFLRSVYKPPSELSADKSSPPSELTKEKPSSELITPEQPLRSIVVD 277
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00130 277 PANTHER AQUAPORIN NIP2-1 10 243 IPR034294 -
Trre6g00130 277 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Trre6g00130 277 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre6g00130 277 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre6g00130 277 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre6g00130 277 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre6g00130 277 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre6g00130 277 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre6g00130 277 SUPERFAMILY Aquaporin-like 22 241 IPR023271 -
Trre6g00130 277 CDD MIP 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre6g00130 277 MobiDBLite consensus disorder prediction 246 268 - -
Trre6g00130 277 MobiDBLite consensus disorder prediction 241 277 - -
Trre6g00130 277 Pfam Major intrinsic protein 21 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre6g00130 Trre-Chr6 862932 863765 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00130 16 262 Major Intrinsic Protein MIP AT5G37820 62.097 5.62e-108 314