Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00126 ATGGAAGCCAACACTTTTGCAAGTTTTTCTTCCAAAAATGTTCTCACATTTGCAATTTTCTTCTTGCTAGCAATATCTAGCATCACTTTAGCATGTGATGAAAATTCTAAAATCCCTACCAATTCCACCAAAACCAACATCAACTACACTTATACTAGCCCCTCCAATACAACCCAAAAAAATAATTTCAAAACCTACATTAAAAATTCATGCAATTCAACCACATATCCATATATATGCTACAAATCTTTATCTCCATATGCTTCAACTATTGAAAAAGATCCTTTAAAGTTATGCAACGTCTCTCTTTCGGTTGCGTTAAAGGCAGCTCGCGGCGCATCCTCGGCCGTATCGAAGCTTCTAAACAACAATGACAATAAATTGTCAAGCATTGGTGAAGAAGTTGTACAAGATTGCTTTAGCAATTTGGAGGATTCAATAGAACAATTGCAAGATTCTCTTGATGCCATGACAAATTTGGATGTTGATTTTGATAGAGAATTTCAAATTAGTAACATAAAGACTTGGGTTAGTTCTGCTATTACTAATGATCAAACTTGCTATGATGGATTTGATGAGATGAATGTAGATTCCACACTTAGGGACAAAATCAGAAGCAAAGTTTTGAATGTGGCAAGGAAGACTAGCAATGCTTTGTATTTTATCAACAATAACATATATTAA 684 0.3421 MEANTFASFSSKNVLTFAIFFLLAISSITLACDENSKIPTNSTKTNINYTYTSPSNTTQKNNFKTYIKNSCNSTTYPYICYKSLSPYASTIEKDPLKLCNVSLSVALKAARGASSAVSKLLNNNDNKLSSIGEEVVQDCFSNLEDSIEQLQDSLDAMTNLDVDFDREFQISNIKTWVSSAITNDQTCYDGFDEMNVDSTLRDKIRSKVLNVARKTSNALYFINNNIY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00126 227 CDD PMEI-like_3 70 224 - -
Trre6g00126 227 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 224 IPR035513 -
Trre6g00126 227 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 225 IPR035513 -
Trre6g00126 227 FunFam Pectinesterase 64 225 - -
Trre6g00126 227 Pfam Plant invertase/pectin methylesterase inhibitor 66 219 IPR006501 GO:0004857
Trre6g00126 227 PANTHER PECTINESTERASE INHIBITOR-LIKE 19 219 - -
Trre6g00126 227 Coils Coil 140 160 - -
Trre6g00126 227 SMART PMEI_2 62 221 IPR006501 GO:0004857
Trre6g00126 227 NCBIfam pectinesterase inhibitor domain 53 224 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00126 Trre-Chr6 835263 835946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00126 38 224 Carbohydrate Esterase AT1G53830 25.668 1.55e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00126 - - gmx:100527443 274.633