Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00125 ATGCTTGTTCAATTAGCATTAAAACAAGCTCTTATCATGCAAAAAGAAGCACAAGAAAATTCACATCAAAATTCAACGGTGCATAAAGTGGTTCATGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTCAACCGTACACTTGAAGGATTAAACAATTCAAACAAAACATGTTCACCGCATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCACAAGATTTCAACTTCATAGTGCAAACAAATGTCATTGAGATGATAAGGAACATCTTAGCCATCAATATGTATTTCATGAAACCCAACAAAGAAACAAAAGAAGGATTGTTTCCAAGTTGGTTTTCTAGGCATGAGAAGAAGCTTTTACAGACTAACTCTCCAATAAAGTTCAATCTTGTGGTTGCAAAAGATGGTTCTGGAAATTTTAAGACTGTGCAAGCTGCTCTTGATGCTGCTGCTAAGAGAAAATATAAGACAAGGTTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAGAATATTGAGGTAGCTGTTCATAATGATAATATTATGTTGGTTGGTGATGGAATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGCTCTGCAACAGCTGGCATTGATGGACTTCACTTTATTGCACGTGACATAACCTTCCAAAATACTGCCGGTCCACACAAGGGTCAAGCCGTAGCGCTTCGATCAGCCTCAGATCTCTCGGTATTCTACCGTTGTGCCATATCAGGTTACCAAGACACCCTAATGACTCATGCCCAACGTCAATTTTACCGACAATGCTACATTTATGGCACTGTAGACTTCATCTTTGGCAACGCTGCAGTGGTATTCCAAAATTGTAAAATTTTCGCAAGAAAGCCTTTAGATGGTCAAGCTAACATGATCACTGCCCAAGGTCGAGGTGACCCATTCCAAAACACCGGAATTTCATTCCACAACTGTCAAATTATGGCTGCATCCGATCTAAAGCCTGTCGTAGACAAGTACAATACCTTCTTGGGCCGACCATGGCAACAATACTCGAGAGTTATGGTAATGAAAACTTTTATGGATACTTTAGTGAGCCCTTTAGGTTGGTCTCCATGGGGTGACACAGATTTTGCTCAAGACACATTGTACTATGGTGAGTACGAAAACTATGGACCTGGTTCATCAACAGAAAATAGAGTAAAATGGCCTGGTTATCATGTGATAACAAGACCAAATGAAGCCGCAAAATTTACTGTTACTGGACTCCTTGCTGGCCCAACATGGTTGGCTACAACTAGTGTGCCATTTACTTCTGGCCTTTGA 1380 0.3928 MLVQLALKQALIMQKEAQENSHQNSTVHKVVHGDCLKLFENTIFHLNRTLEGLNNSNKTCSPHDAQTWLTTSLTNIETCKSGALELNAQDFNFIVQTNVIEMIRNILAINMYFMKPNKETKEGLFPSWFSRHEKKLLQTNSPIKFNLVVAKDGSGNFKTVQAALDAAAKRKYKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCKIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIMAASDLKPVVDKYNTFLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTENRVKWPGYHVITRPNEAAKFTVTGLLAGPTWLATTSVPFTSGL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00125 459 PANTHER PECTINESTERASE 5 449 - -
Trre6g00125 459 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 19 110 IPR035513 -
Trre6g00125 459 SUPERFAMILY Pectin lyase-like 142 458 IPR011050 -
Trre6g00125 459 CDD PMEI-like_3 2 115 - -
Trre6g00125 459 Pfam Pectinesterase 146 444 IPR000070 GO:0030599|GO:0042545
Trre6g00125 459 Gene3D - 140 459 IPR012334 -
Trre6g00125 459 Pfam Plant invertase/pectin methylesterase inhibitor 3 109 IPR006501 GO:0004857
Trre6g00125 459 ProSitePatterns Pectinesterase signature 2. 291 300 IPR033131 -
Trre6g00125 459 FunFam Pectinesterase 140 459 - -
Trre6g00125 459 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 113 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00125 Trre-Chr6 829202 831509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00125 1 459 Carbohydrate Esterase AT5G51490 57.415 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00125 K01051 - gmx:100806133 729.169