Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00109 ATGGAGAACAATGGTAGAGTATGCCCTATTTGTGACAAGTTATTTTCTAATGGGAAAGCTTTGGGAGGGCATATAAGATCACATTTAGCTAAATTACCAGTCCCTCCAAAAATTGGTAGAGTATGTACTTTGGCGTTTTATCCAAAAATTCCAACCGGGAAAAGATCGAAACGCAAACGTAAACAATTTATTGTTGCCGAGGAAAAAGAAGATATTACACAATTTAATGAGGCTGAAAAAAATGCAGAGAATACACAATGTAGATTTGTGTATAATAATAACGATATTGAAGCTATGGGAACATTATTTATTATGAACAGGAAAGAATGGCAACAAATTAAGAAGAAATACTATAGTGAAGAAGTTGGTCGAAGTGGAAACAAAGATGATGTTGCAAATGGAGAAATGAATATCTGA 417 0.3357 MENNGRVCPICDKLFSNGKALGGHIRSHLAKLPVPPKIGRVCTLAFYPKIPTGKRSKRKRKQFIVAEEKEDITQFNEAEKNAENTQCRFVYNNNDIEAMGTLFIMNRKEWQQIKKKYYSEEVGRSGNKDDVANGEMNI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00109 138 Coils Coil 65 85 - -
Trre6g00109 138 SUPERFAMILY beta-beta-alpha zinc fingers 6 33 IPR036236 -
Trre6g00109 138 Pfam C2H2-type zinc finger 7 30 - -
Trre6g00109 138 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Trre6g00109 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00109 Trre-Chr6 747894 748310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00109 8 37 C2H2 Transcription Factor Family AT1G02030 53.333 3.06e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g00109 zf-C2H2_6 9.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00109 - - tpra:123915412 194.512