Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00101 ATGGATAGGATTCAGGAGAGAGATGAAAGTAACAAAACTCGACATTCATCGTCTTCGGTTGTAGCTCTAGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTCAACAAATTTGTTCCTGAGGGAATGATTGTCTTCAAGTTGATACATGTTCATGCTGGTATAGTAGGAGTTCCCACACCAATGGGAAATTATCTCCCAATTTCACAAGTGCGTAATGATGTAGCGGCTGCTTACAGACAAGAAGTGGAGTGGCAAACAAATCAAATGCTTCTACCTTTTAAGAGAATGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGCAGTGATTGAATCGGATGATGTGGCATCTGCAGTGGCGGAGGAAATAACTAAGGATGGAATAACCAAATTGGTTGTTGGAGCTTCATCTGGTGGCTTATTTAAAAGTAAACATAAGGGTATGTCTGCAAAAATCTCAGTTTGCACTCCAAGATTTTGTACAGTTTATGCTGTTTCTAAAGGAAAATTGTCCATACGGCCATCGGACATGCAGTTTGATGAAAGCATTACAGATGACGCAAGTGAAATCAGTTTTTCCTCCAGCAGCTCATCAAACTACACTTCTACTACAACTCAGACAGATTCTGGCTCGGTTGCATCATATGCTGCTTTACATTCATCTTCCTTGGCAACACAGCGATTTCAAGCTCTTTCAAGTATGAATCAGAACCTTGTAAACACAACTCCTAGTTTGAATGAAACTAATCATTCTAGAGGCCAGTCCATTGATCTTGGACGAGGAAATGTTGCTACAACTTCTGCTAGAAACTCAGATTTCGACCGTGGTTTGAGTCGGGCCTCTAGTTTCAGAAGCATTGTTTCAGATACTGATACTTGGATTTATGATCAAAACTCTTTAAAGGATGCGCCATTAGCTTCTAAACTTAAGTCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGTCCAAGGAATGCATGCAGTAGCTCAAACTGAGAACATCGATGCATCACGAAAGCTAAGTGAACTAAGCAAGAGGAGATCAGGAGAATCGATGAAAATGAAGGAGATTATTGCTAAGGAGGAAGTGGCTAAAGAATTAGCAAGACAAGAAATAGAGAAATATGAAGCTGCAGCAAGAGAAGCTGCATATTTGAAAGAATGTGCTGAAAGAGAAGCTTCAGAAAGAAAAGAAACAGAATTGAAAGCTATTCGTGCTGCCAAAGAGAAAGAAAAGCTAGAGGATGCTCTAAGTGGTTCCACACCTCAGTACCGAAAATTTATGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCTTAGAATTGGAATGGGTGCATATGGAATGGTGTATAAGTGCACTTTGCATCATACAACTGTTGCTGTTAAAGTTCTCCACTCTCCCGGAATCAGCCAAAACAAGCAATTCCAGCAAGAGTTGGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTATGAATACATGGAAAATGGTAGCTTGGAGGATAGACTATTTCAGAAAAACAGTACCATCGCAATCCCATGGTTTGATAGGTTTCGAATAGCTTGGGAAATTGCATCCGCTCTTTCTTTTCTTCACAGCTCAAAGCCACAGCCTATCATCCATCGTGACTTGAAACCTGCGAACATCTTGCTTGGTGGTAACCTTGTCAGCAAGATTGGTGATATCGGTCTTTCTACGATTCTCACTTCAGACGATTTATCTACCATGTATAAGGACACAGCGCCTGTTGGCACACTCAGCTACATTGATCCTGAGTATCAAAGGAGTGGTTTAATATCTACGAAATCTGATGTTTATGCTTTCGGATTAGTGATGTTACAGTTGTTGACAGCAAAACCAGCAACAGCAATTACTCATGTGGTTGAAACAGCAATTGAGGACGGTAACTTAACAGATATATTAGATACAAAAGCAGGGTCATGGCCATTTCAAGAAACATTAGACTTAGCTCGATTAGCTTTGAGTTGTGCGGAGCTTCGGCGTAGAGACCGACCTGATTTGTTAGATCACGTGCTTCCTACATTGGAGAAGTTAAAAGAAGTTGCTGATAGGGCTCATTATTCGGCTTCAATGGTTACCCTTAAACCCAAAGCTCCAAACCATTTTATCTGCCCTATACTTCAGGATGTGATGGATGACCCTTGTGTAGCCGCAGATGGATATACATACGATCGAAAAGCAATAGAAAAATGGCTTGAAGAGAATGAGAAATCACCAATGACAAACATGGCTTTGCCTCATAAGATTCAAATTCCTAATTACACACTTCTATCAGCAATTTTGGAATGGAAATCTAAAGAAATATGA 2424 0.4026 MDRIQERDESNKTRHSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIVFKLIHVHAGIVGVPTPMGNYLPISQVRNDVAAAYRQEVEWQTNQMLLPFKRMCEQRKVHVDVAVIESDDVASAVAEEITKDGITKLVVGASSGGLFKSKHKGMSAKISVCTPRFCTVYAVSKGKLSIRPSDMQFDESITDDASEISFSSSSSSNYTSTTTQTDSGSVASYAALHSSSLATQRFQALSSMNQNLVNTTPSLNETNHSRGQSIDLGRGNVATTSARNSDFDRGLSRASSFRSIVSDTDTWIYDQNSLKDAPLASKLKSPNRQENFNLELEKLRIELRHVQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAKELARQEIEKYEAAAREAAYLKECAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYRKFMWDEIVSATSSFSEDLRIGMGAYGMVYKCTLHHTTVAVKVLHSPGISQNKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFQKNSTIAIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILTSDDLSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPATAITHVVETAIEDGNLTDILDTKAGSWPFQETLDLARLALSCAELRRRDRPDLLDHVLPTLEKLKEVADRAHYSASMVTLKPKAPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENEKSPMTNMALPHKIQIPNYTLLSAILEWKSKEI 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00101 807 ProSiteProfiles Protein kinase domain profile. 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00101 807 MobiDBLite consensus disorder prediction 243 263 - -
Trre6g00101 807 Pfam U-box domain 737 804 IPR003613 GO:0004842|GO:0016567
Trre6g00101 807 ProSiteProfiles U-box domain profile. 736 807 IPR003613 GO:0004842|GO:0016567
Trre6g00101 807 PANTHER OS02G0152300 PROTEIN 20 801 - -
Trre6g00101 807 Gene3D Phosphorylase Kinase; domain 1 431 525 - -
Trre6g00101 807 Pfam Protein tyrosine and serine/threonine kinase 458 706 IPR001245 GO:0004672|GO:0006468
Trre6g00101 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Trre6g00101 807 Coils Coil 372 406 - -
Trre6g00101 807 Gene3D Transferase(Phosphotransferase) domain 1 526 733 - -
Trre6g00101 807 SMART serkin_6 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00101 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 807 IPR013083 -
Trre6g00101 807 Gene3D HUPs 12 150 IPR014729 -
Trre6g00101 807 SUPERFAMILY RING/U-box 736 805 - -
Trre6g00101 807 CDD RING-Ubox_WDSUB1-like 738 792 - -
Trre6g00101 807 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Trre6g00101 807 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 147 - -
Trre6g00101 807 SMART Ubox_2 740 802 IPR003613 GO:0004842|GO:0016567
Trre6g00101 807 SUPERFAMILY Protein kinase-like (PK-like) 435 707 IPR011009 -
Trre6g00101 807 Coils Coil 408 430 - -
Trre6g00101 807 CDD STK_N 20 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00101 Trre-Chr6 715523 719297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00101 18 804 U-box Gene Family AT4G25160 52.663 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre6g00101 PK_Tyr_Ser-Thr 4.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00101 - - gsj:114409387 1212.98