Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00100 ATGGATAGGATTCAAGAGGCAGATGAAAATAATAAAACTTCAGTTGTTGCTTTAGCAATCAAGGGTAATAAGAAAAGCAAATATGTTGTACAATGGGCACTTGATAAATTTGTTCATGAAGGGATAAGTATTTTCAAGCTTATTCATGTTAGAGCTGTTATAACTGGAGTTCCTACACCAATGGGAGATGTGCTTCCTATGTCACAAGTGCGAAATGATGTAGCAAATGCTTTCAGAAGGGAAGTGGAGTGGCGAACAAATCAAATGCTTCTACCTTTTAAGAGTTTGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGCAGTGATTGAATCAGATGATGTAGCAACTGCAGTAGCAGAGGAAGTATCTAAGAATGTTATTACCAAACTTGTTCTTGGAGCTTCATCTTCTGGTATATTTAAAAGCAAACACAAGGGTATGTCTGCGAAAATATCAGTACGCGCTCCAAGATTTTGTACAGTTTATGCTGTTTCAAAAGGAAAATTGTCCATACGGCAGTCAGACATGCAGACTGACGGAAACATTGTAGATGATACCACCAGTGAAACCAGTTTTTCGTCGAGCAGCTCATCAAACTACACTTCCACCTCTCACTCTCAGACAGATTTTGGCTCAGCTGCATCATCTGCTGCTTTACATTCCTATCCCCTGGCAACACGACGACATAAAGCTCTCTCGAGTACAGATCAGACCCTTCTAAGTACAAGTCCTAATTTAAGTGAAACTAATCATTTTAGAGGCCAATCTCTAGATCTTGGGAGAAAGAATGCTGATACAAGTTCTTCTAAAAACTCAGACATTGATCATGCTCTAAGCCAGGCCTCTAGTGGCGGAAGCATTTCAGATACCGAGTCTTCCATTTACGGTCAAAACTATGCCAAGTATGTGCCACAAGGTACTAAACGTCCAACACCAAATAGACAGGAAAACTATAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCACAAGGAATGCATGCAGTAGCTCAAACTGAGAACATTGATGCATCACAAAAGCTGAATGAACTAACCAAGAGAAGATCAGAAGAATCCATGAAAATGAAGGAGATTGTTGCTAACGAGGAGATGGCCGAGGAATTAGCAAATCAAGAAAGAGAGAAATATGAAGCTGCAGCAAGAGAAGCCGAATATCTGAAACAACGTGCTGCAAGAGAAGCTGCAGAAAGAAAAGAAACAGAGTTAAAAGCTATTCATGCTGCCAAAGAGAAAGAAAAGCTTGAGGGTGCTCTGAGTGGTTCCACACCTCAGTACCGAATATTTACGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCTGAAAATTGGAATGGGTGCATATGGAGTGGTGCATAAGTGCACTTTGCATTACACAACTGTTGCTGTTAAAGTTCTTCACCCTAATGGAAACCGCCAAAGCAAGCAATTCCAGCAAGAGTTAGAGATATTGAGCAGAATTCATCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTATGAATACATGGAAAATGGTAGCTTGGAGGATAGACTATTTCAGAAAAACAGTACCATCGCAATCCCATGGTTTGATAGGTTTCGAATAGCTTGGGAAATTGCATCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCACAACCTATCATCCATCGCGACTTGAAACCGGCAAACATCTTGCTTGGCCATAACCTTGTCAGCAAGATTGGTGATGTCGGTCTTTCCACAATTCTAAATTCAGATGATTTATCTGCCATGTATAAGGACACGGCGCCTGTTGGAACACTCAGCTACATTGATCCTGAGTATCAAAGGAGTGGTTTAATATCTACAAAATCTGATGTTTATGCTTTTGGATTAGTGATCTTACAGTTGTTGACAGCAAAACCAGCCGTAGCACTTACTCATGCAGTTGAAACAGCTATTGATGATGGTAACTTAGCAGATATATTGGATCCAAAAGCAGGACCATGGCCACTAAAAGAGACACTAGACATAGCTCGGTTAGGATTGAGCTGTGCAGAGATGCGGCGTAAGGATCGACCAGATTTGAAAGATCATGTGCTACCAATGCTTGAGAGGTTGAAAGATGTTGCCGATGAGGCTCAAGCTCAACATTCTGCTTCATTAGTTACTATAAAATCCAAACCTCCCAACCATTTTATATGCCCTATACTTCAGGATGTGATGGAAGATCCTTGTGTTGCCGCAGATGGATATACATACGATCGCAGTGCAATTGAAAAGTGGCTTCAAAAGAATGACAAATCACCAATGACAAATATGGTTTTACCTCATAAGCATCTAATTCCTAATTATACACTTCTATCTGCAATTTTGGAGTGGAAGACCTGA 2409 0.406 MDRIQEADENNKTSVVALAIKGNKKSKYVVQWALDKFVHEGISIFKLIHVRAVITGVPTPMGDVLPMSQVRNDVANAFRREVEWRTNQMLLPFKSLCEQRKVHVDVAVIESDDVATAVAEEVSKNVITKLVLGASSSGIFKSKHKGMSAKISVRAPRFCTVYAVSKGKLSIRQSDMQTDGNIVDDTTSETSFSSSSSSNYTSTSHSQTDFGSAASSAALHSYPLATRRHKALSSTDQTLLSTSPNLSETNHFRGQSLDLGRKNADTSSSKNSDIDHALSQASSGGSISDTESSIYGQNYAKYVPQGTKRPTPNRQENYNLELEKLRIELRHAQGMHAVAQTENIDASQKLNELTKRRSEESMKMKEIVANEEMAEELANQEREKYEAAAREAEYLKQRAAREAAERKETELKAIHAAKEKEKLEGALSGSTPQYRIFTWDEIVSATSSFSEDLKIGMGAYGVVHKCTLHYTTVAVKVLHPNGNRQSKQFQQELEILSRIHHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFQKNSTIAIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGHNLVSKIGDVGLSTILNSDDLSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVILQLLTAKPAVALTHAVETAIDDGNLADILDPKAGPWPLKETLDIARLGLSCAEMRRKDRPDLKDHVLPMLERLKDVADEAQAQHSASLVTIKSKPPNHFICPILQDVMEDPCVAADGYTYDRSAIEKWLQKNDKSPMTNMVLPHKHLIPNYTLLSAILEWKT 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00100 802 Pfam Protein tyrosine and serine/threonine kinase 454 704 IPR001245 GO:0004672|GO:0006468
Trre6g00100 802 SUPERFAMILY RING/U-box 733 801 - -
Trre6g00100 802 CDD STK_N 15 167 - -
Trre6g00100 802 ProSiteProfiles Protein kinase domain profile. 449 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00100 802 Pfam U-box domain 736 801 IPR003613 GO:0004842|GO:0016567
Trre6g00100 802 Gene3D Phosphorylase Kinase; domain 1 427 521 - -
Trre6g00100 802 ProSitePatterns Protein kinases ATP-binding region signature. 455 476 IPR017441 GO:0005524
Trre6g00100 802 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 802 IPR013083 -
Trre6g00100 802 MobiDBLite consensus disorder prediction 175 209 - -
Trre6g00100 802 PANTHER OS02G0152300 PROTEIN 15 798 - -
Trre6g00100 802 MobiDBLite consensus disorder prediction 233 292 - -
Trre6g00100 802 SMART Ubox_2 738 800 IPR003613 GO:0004842|GO:0016567
Trre6g00100 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Trre6g00100 802 Coils Coil 363 424 - -
Trre6g00100 802 SUPERFAMILY Protein kinase-like (PK-like) 430 705 IPR011009 -
Trre6g00100 802 Coils Coil 315 335 - -
Trre6g00100 802 Gene3D HUPs 6 156 IPR014729 -
Trre6g00100 802 ProSiteProfiles U-box domain profile. 734 802 IPR003613 GO:0004842|GO:0016567
Trre6g00100 802 CDD RING-Ubox_WDSUB1-like 736 790 - -
Trre6g00100 802 Gene3D Transferase(Phosphotransferase) domain 1 522 734 - -
Trre6g00100 802 SMART serkin_6 449 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00100 Trre-Chr6 708213 712684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00100 16 802 U-box Gene Family AT4G25160 51.220 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre6g00100 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00100 - - gsj:114409387 1167.91