Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00079 ATGACCAATATGCTTCCTATCATAGTGCTTGTTATTACTTCCAATGTAATGTCATTGTTCTTGTTCTCTCAATTATCCACCGCAATTGATACAATCACCCAATATGAATCTCTAATTGATGATGGCAACACCTTGGTTTCTAATGATGGAACTTTTGAGTTAGGCTTCTTTAGACCAGGTAGTTCCACAAATCGATATGTTGGAATATGGTACAAAAACATCCCAAATAGAAGAATAGTTTGGGTTGCAAACCGTGATAATCCAATCAAACACAACAATTCAAACTCAACCATGTTGGTTATAAGCAAAGAGGGAAACCTTGTACTTCTTACCAACAACAATCAAACTCTTGTTTGGTCAACAAACATCACAACACAATCATTGTCTAATAATACAAGTTCTCATATAGCTCAATTATTAGACAATGGAAACTTTGTAATCAAAGACAAACAAAATAGTGATCAACAAAGCAAAAAATTTCTATGGCAAGGTTTTGACTTTCCTTGTGATACTTTGTTGCCAGAAATGAAGCTTGGATGGGACCTAAAAACCGATTTTAATCGCCAGTTAACTTCTTGGAAAAATTGGGATGATCCGTCTTCAGGAAATTTGACTTGGAGTATTGTCCTTAATAGCAATCCAGAAAATGTATTGAAAAAAGGGTCAATTGAAATTTATAGAAGTGGTCCTTGGAATGGAGTTGGCTTTAGTGGATCACCAGCAATCACCGTTACTTCGATCATTGAAACAAAATTTGTAAACAATTCGAATGAAGTTTATTACACATATAGTCTTGTGAACAAGAGTATAATTTCAGTAATTTATTTGAACCCAACACTTTTTCTTCGTCAACGCGTTACATGGATTCCGGAAGACAACACTTGGAGGGTTTATGAGCTCGTGCCAAGAGATGATTGTGATGCCTATAATCCTTGTGGCCCTAATGGAAATTGTGTTCCTAACCAGTCTCCAATTTGTCAATGTTTAGATGGGTTTGAGCCTAAATCGCGGGAAAATTGGGACACGTATAATTGGACACAAGGATGTGTTCGCAAAGGCAAAGAAACTTCGACTTGTGGGGTGAATGATGGTTTTGGAAGATTTTCTGGATTGAAATTGCCGGCAACAACACATTCTTGGGTTGATGCAAATATGACACTTGAGGATTGTAAGAACAAATGCTTAGAAAATTGTTCTTGCACAGCTTATTCAAACTTGGATGTGAGAGGAGGTGGTAGTGGTTGCTCTATATGGTTTGGTGATCTTATCGGTTTGAAACAAGTTACATCGGTCCAACAAGATTTATATGTTCGAATGGATGCTTCATACGTAGATTCAAATGGAGAAATTTCTGGTGGGCATAAGAAAAGTCATACTTTGGCAATTGCAATCACTATTCTGTTGGTCATGGTTTTGCTACTCGTGATCATAGTCTTCTATGTTTACAAGAGAAAAAGAAAGCAAAGAGAAACGGAGGATAAATCAGAGATCATTTTAGCCGAAGTGGAAGATGAAGATGGACGAGATTTAGAGCTTCCTTTCTTCAATCTTTCTACAATAATTGATGCCACCAATAACTTTTCAAACGATAATAAGCTTGGAGAAGGTGGTTTTGGGCTGGTATATAAGGGTACACTAGCTACAGAAAAACAAGTGATTGCCGTCAAAAGACTTTCAGGAAGTTCGAGACAAGGAGCAAAAGAATTTAAAAATGAAGTTATATTATGTGCAAAGCTTCAACATCGAAATCTTGTCAAGGTTCTAGGTTGTTGTATTCAAGGAGAAGAGAGAATACTTATCTATGAATATATGCCCAACAAAAGCTTAGATTCATTTCTTTTTGATTCTGCTCAAAAGAAACTTCTAGATTGGTCCAAGCGCTTTAGTATCATATGCGGAGTTGCTCGTGGACTTCTTTATCTTCATCAAGATTCTAGGTTGAGGATCATACATAGAGATCTAAAACCAAGTAATATTTTGTTAGACAATGATATGAATCCGAAAATTTCAGATTTTGGCTTGGCAAAAATTTGTGGAGATGATCAAGTTGAAGGGAATACAAACAAAGTAGTCGGGACACATGGTTATATGGCTCCTGAGTATGCCATTGACGGACTATTCTCCATAAAATCTGATGTATTTAGCTTTGGAATACTATTGCTAGAGATTGTGAGTGGAAGGAAAAATAAAGGACTCAGCTATCCAAAAAACAATGACAATCTTGTTAGACATGCTTGGAGATTGTGGAAAGAAGGTAGCTCAAATGAATTGGTTGATGATTGTTTCGGAGACTCATATATTCTATCTGAAGCTTTACGTTGCATCCAAGTTGGTCTTTTATGTCTACAACAACATCCAATTGATAGACCTAATATGGTATCGGTGCTTGCAATGTTGACAAATGAAACTGTTTTAGCTCAACCAAAGGAACCTGGTTTCATAATAAAAAGGGTCTCTATTGAAGGAGAATCTACATCAGAAAATGTAATGTCTTCCTCAATCAATGAAGTCACTATTTCTTTATTGGATGCTAGATGA 2538 0.3629 MTNMLPIIVLVITSNVMSLFLFSQLSTAIDTITQYESLIDDGNTLVSNDGTFELGFFRPGSSTNRYVGIWYKNIPNRRIVWVANRDNPIKHNNSNSTMLVISKEGNLVLLTNNNQTLVWSTNITTQSLSNNTSSHIAQLLDNGNFVIKDKQNSDQQSKKFLWQGFDFPCDTLLPEMKLGWDLKTDFNRQLTSWKNWDDPSSGNLTWSIVLNSNPENVLKKGSIEIYRSGPWNGVGFSGSPAITVTSIIETKFVNNSNEVYYTYSLVNKSIISVIYLNPTLFLRQRVTWIPEDNTWRVYELVPRDDCDAYNPCGPNGNCVPNQSPICQCLDGFEPKSRENWDTYNWTQGCVRKGKETSTCGVNDGFGRFSGLKLPATTHSWVDANMTLEDCKNKCLENCSCTAYSNLDVRGGGSGCSIWFGDLIGLKQVTSVQQDLYVRMDASYVDSNGEISGGHKKSHTLAIAITILLVMVLLLVIIVFYVYKRKRKQRETEDKSEIILAEVEDEDGRDLELPFFNLSTIIDATNNFSNDNKLGEGGFGLVYKGTLATEKQVIAVKRLSGSSRQGAKEFKNEVILCAKLQHRNLVKVLGCCIQGEERILIYEYMPNKSLDSFLFDSAQKKLLDWSKRFSIICGVARGLLYLHQDSRLRIIHRDLKPSNILLDNDMNPKISDFGLAKICGDDQVEGNTNKVVGTHGYMAPEYAIDGLFSIKSDVFSFGILLLEIVSGRKNKGLSYPKNNDNLVRHAWRLWKEGSSNELVDDCFGDSYILSEALRCIQVGLLCLQQHPIDRPNMVSVLAMLTNETVLAQPKEPGFIIKRVSIEGESTSENVMSSSINEVTISLLDAR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00079 845 ProSiteProfiles Protein kinase domain profile. 527 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00079 845 CDD B_lectin 41 168 IPR001480 -
Trre6g00079 845 Gene3D Hepatocyte Growth Factor 355 437 - -
Trre6g00079 845 ProSiteProfiles Bulb-type lectin domain profile. 30 160 IPR001480 -
Trre6g00079 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Trre6g00079 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 199 IPR036426 -
Trre6g00079 845 SMART blect_4 36 168 IPR001480 -
Trre6g00079 845 CDD STKc_IRAK 533 801 - -
Trre6g00079 845 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 790 - -
Trre6g00079 845 Pfam Protein tyrosine and serine/threonine kinase 530 737 IPR001245 GO:0004672|GO:0006468
Trre6g00079 845 SMART ntp_6 360 439 IPR003609 -
Trre6g00079 845 Pfam D-mannose binding lectin 79 194 IPR001480 -
Trre6g00079 845 CDD EGF_CA 304 336 - -
Trre6g00079 845 Pfam S-locus glycoprotein domain 226 336 IPR000858 GO:0048544
Trre6g00079 845 Pfam PAN-like domain 359 423 IPR003609 -
Trre6g00079 845 CDD PAN_AP_plant 356 438 - -
Trre6g00079 845 ProSiteProfiles EGF-like domain profile. 302 338 IPR000742 -
Trre6g00079 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 165 - -
Trre6g00079 845 ProSiteProfiles PAN/Apple domain profile. 359 441 IPR003609 -
Trre6g00079 845 SUPERFAMILY Protein kinase-like (PK-like) 510 811 IPR011009 -
Trre6g00079 845 Gene3D Phosphorylase Kinase; domain 1 485 603 - -
Trre6g00079 845 Gene3D - 23 164 IPR036426 -
Trre6g00079 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Trre6g00079 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 490 603 - -
Trre6g00079 845 Pfam Domain of unknown function (DUF3403) 800 845 IPR021820 GO:0004674
Trre6g00079 845 PIRSF SRK 1 845 IPR024171 GO:0004674
Trre6g00079 845 Gene3D Transferase(Phosphotransferase) domain 1 604 810 - -
Trre6g00079 845 SMART serkin_6 527 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00079 845 ProSitePatterns Protein kinases ATP-binding region signature. 533 556 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00079 Trre-Chr6 558310 561822 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00079 515 845 Receptor kinase-like Gene Family AT4G11530 55.457 5.18e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g00079 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00079 - - tpra:123915417 1438.32