Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00078 ATGGAATTCCCAAACAAAAATACAATACTAGAAACCGCTTATGAGAATTTGAACTCAATCAGTGTTCTTACTCACCAACCCTCATCATTACTCAACCGTACCGGTCATGCCCGTTTTCGCCGCGCTCCGGTGATTCCATTACCTCAACCACCACAAACTCTATTTCCCTCCACCACTACGCCACCGCTACCACTTCATATTCAACCTCAACGCCAATCTCCAACTCCCGGTTTAACTAAACCTAGTATATTAAGATCTAACCCTAAATTATTATCATTAGATCTTGAATTCCCCCAAGAAACGTATAGCATTTCATCTAACTCATCTTTCGTGTCATCCGCCATCATCGGTGACGGCAGTGTTCCCAATATCGGACAAGGTTCATATCTTCTTACACCGATGATCTCCGGCGGTAAACCACATCTTTCATCGTCATCATTGAAGAATAAGTATCACATCCACTCTGAAAGCGGAAAATGTTTCCGTTACACAAACAAAAGGAAAAATAAGATAACGAGAACCGTGAGAGTAGAGGCGATAAGTGATAAAATTGCGGATATACCAAAGGATGGGTATTTGTGGAAGAAGTATGGCCAGAAATTGATAAAAGGATCACCGTATCCAAGGGGATATTATAAGTGCACTAGAATGAAAGATTGTCCCGCTAAAAAAAAGGTGGAGAGGGCAAAGGATGATCCTAAGATGATGATTGTAACGTACGAGGAACATCATTGTCATATTTGA 744 0.4113 MEFPNKNTILETAYENLNSISVLTHQPSSLLNRTGHARFRRAPVIPLPQPPQTLFPSTTTPPLPLHIQPQRQSPTPGLTKPSILRSNPKLLSLDLEFPQETYSISSNSSFVSSAIIGDGSVPNIGQGSYLLTPMISGGKPHLSSSSLKNKYHIHSESGKCFRYTNKRKNKITRTVRVEAISDKIADIPKDGYLWKKYGQKLIKGSPYPRGYYKCTRMKDCPAKKKVERAKDDPKMMIVTYEEHHCHI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00078 247 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 75 246 IPR044810 GO:0003700
Trre6g00078 247 Pfam Plant zinc cluster domain 152 186 IPR018872 -
Trre6g00078 247 Gene3D WRKY domain 172 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00078 247 Pfam WRKY DNA -binding domain 189 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00078 247 SUPERFAMILY WRKY DNA-binding domain 186 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00078 247 ProSiteProfiles WRKY domain profile. 183 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00078 247 SMART WRKY_cls 188 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00078 Trre-Chr6 552322 553488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00078 29 246 WRKY Transcription Factor Family AT2G24570 48.347 1.07e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g00078 WRKY 5.6e-24 CL0274