Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00060 ATGGCCGAGGTTATTAACTTACCTCCTGAATCTCACGACCGATCTCCAACCACTGCTGCTCCCCATCCTCCTCCTCCCGCCGACGATGATCTCCCACCTCCACCTAACCCTCGTCGGAGAGATTTCGACCGCCGTGACGACAGGGATTTCGACCGCCGTCCTCACCGTGGTGGCAGAGGTGGCCGAGGTGGTTACTACAACCGTGACCGAGACTTCAAGCGCCGTCGTAGTCCTAGCCCTAATTACCGTGACCGTCGCTATTCTCCTCCTCCTCCGCAGTCTAGGAGGTCACCTCCGCCTTATAAGAGATCCAGAAGGGGTAGCCCTCATGGACCCAATGACAGATTTGGCTATGATCACTTTGGTGGCTATGAACGCGGAGTGGGTGGAAGGGGTGGTTATGCAGATGATAGATCTGGTGGCAGGTTTCCACATCGATCTGCAGGCGGATATCAAAACGGAATTTCTGATCTGGATGCCAATCGTGGTTATGCAGATTTGCCAAGTGGAGGTGCTCGAAGAGAGGGGTTGATGTCCTATAAGCAATTCATTCAGGAGCTTGAAGATGACATACTGCCATCTGAAGCTGAGCGTAGATACCAAGAGTACAAATCAGAGTATGTTACTACCCAAAAGCGTGCTTATTTCAATGCTCACAAAGATGAGGCGTGGTTGAAAGATAAATATCATCCAACAAATTTACTGTCTGTGATTGGAAGGAGGAATGATAATGCTCGACGTCTGGCAAAGGATTTTTTGCTTGATTTGCAAAGCGGAACACTAGACATAAATCCGGGTTTAAGCTCGGCATCCGCTAGATCAGAGCAAGCCAGCGAGCCAAATTCAGAGGAGGAAACAGATGCTGGTGATAAACGAAGAAGACATGGTAGGGGATCTAATAAGGATAATGACTTCTCTGCTGCTCCAAAGGATCACCCTGTCAGTTGTGAACCTAGAAGGATACAGGCAGATATTCAACAGGTTCAGGCTGTTGTTCGTAAGCTTGACAAGGAAAAAGGGATTGAAGATAATATTTTAAGCACCAGTGATCATAGTAAAAATGGTGATAAGTCTCACAGTGGATCTGTGGGGCCCGTAATTATAATCCGTGGCCTAACATCTATTAAAGGCTTAGAGGGTGTTGAGCTACTGGACACACTTATAACATATCTTTGGCGGATTCATGGTGTAGATTATTATGGAATGCTTGAGATTAACGATGCCAAGGGTTTTAGGCATGTAAGACCAGAAGGATCAAGGCATGAAGAAACAGGTAAATCAGGGTCAGAATGGGAGAAGAAACTTGATTTATTTTGGCAGAGAAGGTTGGACGGCCAGGATCCCTTGGAAGTAAGGACTGCAAAGGAGAAGATAGATGCTGCAGCAGCTGACATGTTGGATCCATATGTTAGAAAAATTAGGGATGAAAAGTATGGATGGAAGTATGGCTGTGGAGCCAAGAGTTGCACAAAGCTTTTTCATGCGGTTGAGTTTGTTTACAAACATCTCAAGCTAAAACACCCAGAGCTTGTGTTGGAACTAACATCAAAATTGCGTGAAGATCTTTATTTTCAAAATTACATGAATGATCCTGATGCTCCTGGTGGAACACCTGTCATGCAGCAAACTCAGAAGGACAAGCCTTTAAAGCGAAGATTACTGGATGGCCGATTGAAAGATGACCGTGGGAATCGGCGAGACCAGGATAGGAGTGACAGAACAAATGGAGATAGGCCTGACAATTCTCCATCCCGTGAAAGGCAGTTGGGAAACCGTGATGACACAATGTTTGATGCATATGGAGGGTCTGCTGTACCAACATTCAATGCGGATATGCCCCCTCCTCCTTCAGTTTTGATGCCTGTACCTGGTGCTGGGCCTTTGGGACCGTTTGTTCCTGCTCCACCAGAAGTTGCGATGCAGATGTTTAGGGACCAAGGACCTTCATTTGATCCATCAGGAATGACGATACGTTCTGGTCCTCACATAGGTGGACAAGCCTCTATGATTGCTGTTCCTTCGGCCTTTAGACCCGATCCTCGACGGATGCGTAGTTATCAAGATTTGGATGCTCCAGAAGAGGAAGTTACTGTCATTGACTATCGGAGCTTGTAA 2115 0.4676 MAEVINLPPESHDRSPTTAAPHPPPPADDDLPPPPNPRRRDFDRRDDRDFDRRPHRGGRGGRGGYYNRDRDFKRRRSPSPNYRDRRYSPPPPQSRRSPPPYKRSRRGSPHGPNDRFGYDHFGGYERGVGGRGGYADDRSGGRFPHRSAGGYQNGISDLDANRGYADLPSGGARREGLMSYKQFIQELEDDILPSEAERRYQEYKSEYVTTQKRAYFNAHKDEAWLKDKYHPTNLLSVIGRRNDNARRLAKDFLLDLQSGTLDINPGLSSASARSEQASEPNSEEETDAGDKRRRHGRGSNKDNDFSAAPKDHPVSCEPRRIQADIQQVQAVVRKLDKEKGIEDNILSTSDHSKNGDKSHSGSVGPVIIIRGLTSIKGLEGVELLDTLITYLWRIHGVDYYGMLEINDAKGFRHVRPEGSRHEETGKSGSEWEKKLDLFWQRRLDGQDPLEVRTAKEKIDAAAADMLDPYVRKIRDEKYGWKYGCGAKSCTKLFHAVEFVYKHLKLKHPELVLELTSKLREDLYFQNYMNDPDAPGGTPVMQQTQKDKPLKRRLLDGRLKDDRGNRRDQDRSDRTNGDRPDNSPSRERQLGNRDDTMFDAYGGSAVPTFNADMPPPPSVLMPVPGAGPLGPFVPAPPEVAMQMFRDQGPSFDPSGMTIRSGPHIGGQASMIAVPSAFRPDPRRMRSYQDLDAPEEEVTVIDYRSL 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00060 704 MobiDBLite consensus disorder prediction 343 357 - -
Trre6g00060 704 ProSitePatterns Zinc finger C2H2 type domain signature. 484 507 IPR013087 -
Trre6g00060 704 PANTHER ARSENITE-RESISTANCE PROTEIN 2 38 702 IPR039727 GO:0006397
Trre6g00060 704 Pfam SERRATE/Ars2, N-terminal domain 181 262 IPR021933 -
Trre6g00060 704 MobiDBLite consensus disorder prediction 18 32 - -
Trre6g00060 704 MobiDBLite consensus disorder prediction 343 363 - -
Trre6g00060 704 MobiDBLite consensus disorder prediction 1 144 - -
Trre6g00060 704 MobiDBLite consensus disorder prediction 263 316 - -
Trre6g00060 704 MobiDBLite consensus disorder prediction 529 597 - -
Trre6g00060 704 MobiDBLite consensus disorder prediction 545 593 - -
Trre6g00060 704 MobiDBLite consensus disorder prediction 278 316 - -
Trre6g00060 704 MobiDBLite consensus disorder prediction 33 82 - -
Trre6g00060 704 Pfam Arsenite-resistance protein 2 423 604 IPR007042 -
Trre6g00060 704 MobiDBLite consensus disorder prediction 84 98 - -
Trre6g00060 704 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00060 Trre-Chr6 433586 440834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00060 82 704 C2H2 Transcription Factor Family AT2G27100 61.171 0.0 706