Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00057 ATGATTGGGAATAGTTTACATGCTGAGGGAGGGATCTTGGATCCAAGGGAGGTTGCTTTATATTTTCAAGATGGACACCCGGTTGAAGTGAAAGGTGTGGGGAGAAAGGAATTTGTCGTTGTGTTAGAAGAAGTTTCATCAATGAGGGTTGGGAGAAACCCCGATGATGCAACCAAGAGAATGAGGCGCCAATCTCGGTCCAAAACTTTAAAGGTTGAGATTAATTATGTGACCAAAATCCCATTGAAAGCAATTACAAATGCCATACAAGGTCAGGAATCTGAGCACTATCAGGAAGCATTGAGGGTTCTTGACATTATACTGAGGCAGAATGCAGCGAAGCAGGGATGTCTCCTTATTCGCCAATCGTTCTTTCATGAAAATCCAAGGAATATTAAGAACCTTGGTGGTGGTGTTCAATGTTGTCGCGGTTTCCATTCAAGCTTTAGAGTCACACAAAGAGGTTTATCTCTCAATGTTGATGTGTCAACTACATTACTTGTAAAGCCTGGCGCTCTAGTCGACTTCCTTCTCGAGAACCAGAATGTTCAACAACCAAACTTAATAGATTGGTCCAAGGCAAAAAGAATGCTGAATAGTATTAGAATTAAGGCGAACAATAGAGAGTTCAAAATCACTGGACTGAGTGAGAATCCCTGCAGAACACAAAAATTTTTATTGAAACGTGGAAATGATGTTAATGGTGAAGCGCGATCAAGTGAAATCACAATTTATGAATACTTCAAACATCACAAAAAGATTGAACTGAGTTATTCTGCTGATATGCCATGCATCAATGTTGGCAAACCAAAGAGTCCAACTTATTTTCCTGTAGAGCTATGCACAATGGTCTCGTTGCAGCGATACACAAAGCCACATGAAAGGAAAGAAGCTTTGCAACATTCATTAAGAAACAACAGATATGATGATGAGCCTATGCTTTGTTCTTCTGGGATTAATATTGAACCTTTCTTTACTCAAGTCGAAGGTCGTGTGTTGCAAGCTCCAACACTTGTAGTTGGAGGAGGGAATAACTTTTGTCCTCGGAACGGGAGTTGGAATTTCAACGATAAGAAACTAGTTGAACCGGTGAAAATTGAACGTTGGGCAATAGTGAACTTCTCATCTCGGTGTAATACAAATCATTTGTTGAATCTCATTAAAAAGAATTCTGAATTGAAAGGGATGGACTTAAATCCTCCGTTTGACATATTTGAAGAGGATGGTCGCCACAGATGTGGGTCGGCATCTTTCAGGGTTGACAAAATGTTCGATATCTTAAATGCCAAGCTGCCTAAAGACCCTACAGCTCAACTTCTGTTATGTATTCTTCCATTTGGCAAGAATTGTGAGATTTATGGTCCTTGGAAAAGGAGATGTCTAGTTGATGAAGGAATTCCAACTCAATCTTGGGGGGATGAATTCCTTTTTGTTAACTGA 1440 0.4 MIGNSLHAEGGILDPREVALYFQDGHPVEVKGVGRKEFVVVLEEVSSMRVGRNPDDATKRMRRQSRSKTLKVEINYVTKIPLKAITNAIQGQESEHYQEALRVLDIILRQNAAKQGCLLIRQSFFHENPRNIKNLGGGVQCCRGFHSSFRVTQRGLSLNVDVSTTLLVKPGALVDFLLENQNVQQPNLIDWSKAKRMLNSIRIKANNREFKITGLSENPCRTQKFLLKRGNDVNGEARSSEITIYEYFKHHKKIELSYSADMPCINVGKPKSPTYFPVELCTMVSLQRYTKPHERKEALQHSLRNNRYDDEPMLCSSGINIEPFFTQVEGRVLQAPTLVVGGGNNFCPRNGSWNFNDKKLVEPVKIERWAIVNFSSRCNTNHLLNLIKKNSELKGMDLNPPFDIFEEDGRHRCGSASFRVDKMFDILNAKLPKDPTAQLLLCILPFGKNCEIYGPWKRRCLVDEGIPTQSWGDEFLFVN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00057 479 Pfam Mid domain of argonaute 348 389 IPR032473 -
Trre6g00057 479 Gene3D - 332 473 - -
Trre6g00057 479 SMART DUF1785_2 118 170 IPR014811 -
Trre6g00057 479 Pfam N-terminal domain of argonaute 44 108 IPR032474 -
Trre6g00057 479 Pfam Argonaute linker 2 domain 294 339 IPR032472 -
Trre6g00057 479 SUPERFAMILY PAZ domain 165 308 IPR036085 GO:0005515
Trre6g00057 479 ProSiteProfiles PAZ domain profile. 208 285 IPR003100 GO:0005515
Trre6g00057 479 Pfam Argonaute linker 1 domain 120 166 IPR014811 -
Trre6g00057 479 Pfam PAZ domain 174 292 IPR003100 GO:0005515
Trre6g00057 479 SUPERFAMILY Ribonuclease H-like 328 469 IPR012337 -
Trre6g00057 479 CDD PAZ_argonaute_like 170 284 - -
Trre6g00057 479 Gene3D paz domain 164 289 - -
Trre6g00057 479 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 51 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00057 Trre-Chr6 412544 417567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00057 66 477 Eukaryotic Initiation Factors Gene Family AT5G43810 28.635 5.22e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00057 K11593 - mof:131166568 535.798