Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00056 ATGTATTGCTCCTCTCCAGCAAAAATTAATGATCATTATATTACTAATGTTCTCTTGAAAATTAATGCCAAGCTTGGGGGGATGAATTCCTTTTTGTTAACTGAATCTCAGCATTCTATACCATTGGTTTCTAACGTACCTACATTGATTATTGGAATGGATGTTTCACATGGATCTCCAGGTCAATCAGACGTACCATCTATTGCCGCGGTTGTGAGCTGA 222 0.3784 MYCSSPAKINDHYITNVLLKINAKLGGMNSFLLTESQHSIPLVSNVPTLIIGMDVSHGSPGQSDVPSIAAVVS 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00056 73 Gene3D - 37 73 IPR036397 GO:0003676
Trre6g00056 73 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 10 73 - -
Trre6g00056 73 SUPERFAMILY Ribonuclease H-like 12 72 IPR012337 -
Trre6g00056 73 Gene3D - 2 36 - -
Trre6g00056 73 ProSiteProfiles Piwi domain profile. 1 73 IPR003165 GO:0003676
Trre6g00056 73 Pfam Piwi domain 10 72 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00056 Trre-Chr6 412317 413068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00056 8 73 Eukaryotic Initiation Factors Gene Family AT1G48410 51.515 3.62e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00056 K11593 - nnu:104593507 114.775