Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00055 ATGATTACATCTCTATTCAAGGATGATGGTATCATCAGTGACTTGCTTAAAGACTTCTATGCAACTTCGAGAATGAAGCCTCAACAAATCATAATATTCAGGGATGGAGTGAGCGAATCGCAGTTTAACCAGGTCCTCAACATTGAATTGGATGAAATCATAAAGGCATTCAAACATTTTGATGAAAGTTGGTCTCCAAAGTTTGCTTTGATCGTTGCTCAGAAGAATCACCATACTAGATTCTTTAAACCCAATGCTCCTCAAGAAAATGTTTCACCTGGAACTGTTATTGATAACAGTATATGTCATCCTAAAAACAATGACTTCTACTTGTGTGCTCATGCTGGGAAGATTGGTACAACTCGTCCTACTCATTACCATGTTTTATACGATGAAATTGGGTTTTCGGCGGACAATTTGCAAGAACTAGTTCATTCTCTATGTTATGTGTACCAAAGAAGCACAACTGCTATATCAATAGTTGCTCCAATTTATTATGCTCACCTAGCAGCTGCTCAGATAGCACAGTTTATAAAATTTGATGGCACAAAGACTCTTTCCAGCCACAATGAATCAACTTCAGCTGTACCTGCATTACCACCTCTTCATGAACGAGTGACCAATACTATGTTGATAAGATAA 642 0.3769 MITSLFKDDGIISDLLKDFYATSRMKPQQIIIFRDGVSESQFNQVLNIELDEIIKAFKHFDESWSPKFALIVAQKNHHTRFFKPNAPQENVSPGTVIDNSICHPKNNDFYLCAHAGKIGTTRPTHYHVLYDEIGFSADNLQELVHSLCYVYQRSTTAISIVAPIYYAHLAAAQIAQFIKFDGTKTLSSHNESTSAVPALPPLHERVTNTMLIR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00055 213 Pfam Piwi domain 8 179 IPR003165 GO:0003676
Trre6g00055 213 SUPERFAMILY Ribonuclease H-like 11 177 IPR012337 -
Trre6g00055 213 SMART Piwi_a_2 1 179 IPR003165 GO:0003676
Trre6g00055 213 Gene3D - 1 211 IPR036397 GO:0003676
Trre6g00055 213 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 11 181 - -
Trre6g00055 213 ProSiteProfiles Piwi domain profile. 1 179 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00055 Trre-Chr6 410840 412253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00055 10 211 Eukaryotic Initiation Factors Gene Family AT5G43810 46.083 2.26e-55 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00055 K11593 - cave:132163279 305.449