Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00046 ATGGTTAATGGTAGCGGGGAGAAGACGAAAAGGTTGATTTTCTTTGTTGGAGATGAACAGGGCGAAATCGGGTCATTACGAACGGTTCGGGTATTGAATGAAAACGGGTCATCGCTCCAACTCGTCCACGTTCTTCTTGTTCAACGCTGTTTCAATCTCTTTCAGATGACGAACTCCATGTATGATGCATTAGCTTTAATCTCGGCAGTAAAAAGTGTGTTTAAAGATGAGACTAGGGAAAAGTATGAAACTTTTTTAGAAGTTCTCAAGGATTTCAAGGCTGGAAGAATTGATAGAAGAGATGTCAAATATAGAGTGCATGAATTGTTTAAAGGCCATCAAGGTTTAATTTTGCAGTTCAACAAATTCATGCCAACTCAATATGAAATCAAACTTCCATCCGATCATGATAATGATGAACAACAAGGACGCCGATCAGAGACAGAAGATGCATTAGCATTTCTCAAGAAAGTAAAAGATGCGTTTCAAGGTAGGGAAAAGTATGACGAGTTTATAGAAATTTTAAAGGATAGCAAGGCTGGAAGAATTGATAGAAGTGTTGTTGTGGAAAGAGTCAAGAAGATGTTTGAAGGGCATACAAATTTAATTTTGGGATTCAACGCCTTCTTGCCAAACACACTTCAAATTCAGCTTCGCAATGGGGGAAAAAGGAAGAAGTTAGTAGAGAACTGTGAAATTCCTTGGGATCTGCGTGATATCATTTCCAGAAAACTAGATATTGACGACTTCTTCGAATTTGCTGAACTGAAGAGTACTCCTGCTGTAACATCTTTCTCACACCTAAGGTTGGTTAGTTGTGATGGACAGCTTTTAGTGATTCATATTACATTGGAGGAAATATTGAATGTGTACAAGATAGACTTCTCAACCAAGAATTATGTCAAGCTGGAAACTTTGGGTGACATTGCATTATTTTATGCTTCGGGGGAGTACTTTTATGCATTGAGTAACCCGAGAATGTGGGGTTATGAACCTAACTCTTTGCATGTCATCAATCTTTCATGTACAAAATACATAGTGTGTGTGGGGGATGACAACAAGCTGCCAGAATACATTATGCATGATACACATAGAGTTCCTCCAAGAGAAAGAGGCTACTTGTTGGACTGGTGTTTCAAACATCTATACTATGAGGTGGACTATTCTCCAAGTTAA 1176 0.3852 MVNGSGEKTKRLIFFVGDEQGEIGSLRTVRVLNENGSSLQLVHVLLVQRCFNLFQMTNSMYDALALISAVKSVFKDETREKYETFLEVLKDFKAGRIDRRDVKYRVHELFKGHQGLILQFNKFMPTQYEIKLPSDHDNDEQQGRRSETEDALAFLKKVKDAFQGREKYDEFIEILKDSKAGRIDRSVVVERVKKMFEGHTNLILGFNAFLPNTLQIQLRNGGKRKKLVENCEIPWDLRDIISRKLDIDDFFEFAELKSTPAVTSFSHLRLVSCDGQLLVIHITLEEILNVYKIDFSTKNYVKLETLGDIALFYASGEYFYALSNPRMWGYEPNSLHVINLSCTKYIVCVGDDNKLPEYIMHDTHRVPPRERGYLLDWCFKHLYYEVDYSPS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00046 391 Pfam Paired amphipathic helix repeat 80 123 IPR003822 GO:0006355
Trre6g00046 391 Pfam Paired amphipathic helix repeat 166 210 IPR003822 GO:0006355
Trre6g00046 391 FunFam Paired amphipathic helix protein Sin3 150 211 - -
Trre6g00046 391 SUPERFAMILY PAH2 domain 59 128 IPR036600 GO:0006355
Trre6g00046 391 PANTHER SIN3B-RELATED 147 229 IPR039774 GO:0003714
Trre6g00046 391 FunFam Paired amphipathic helix protein Sin3 62 125 - -
Trre6g00046 391 Gene3D Paired amphipathic helix 150 211 IPR036600 GO:0006355
Trre6g00046 391 Gene3D Paired amphipathic helix 62 125 IPR036600 GO:0006355
Trre6g00046 391 ProSiteProfiles PAH domain profile. 56 127 IPR003822 GO:0006355
Trre6g00046 391 ProSiteProfiles PAH domain profile. 144 213 IPR003822 GO:0006355
Trre6g00046 391 SUPERFAMILY PAH2 domain 143 212 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00046 Trre-Chr6 330816 335745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00046 148 218 WRKY Transcription Factor Family AT4G12020 49.296 7.56e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre6g00046 PAH 3.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00046 K11644 - mtr:120579674 223.787