Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00041 ATGGATTCAAGGAGAATGGAAGAAGAAGAAGAAGGTCCACCATCAAACGATCTGTGTTCAATATGTCATGGAAACTTCCAGAATCCATGTCAAGCTAACTGTTCTCATTGGTTTTGTGCTAACTGTATTATGCTTGTTTGGAGACACTCTTCCGGCATTCAACCTTGTAAATGTCCACTCTGTCGTCGACCCATTAATCTTCTCGTTCCAACCAACAACGATGATCCTCAAACTATGTCTGAGATTCAAACCTATAACCGTGTTTTTGGTCAACAATCCAATGCTCCTATTACTCAGAGAATTCTTGATCTTCCCTTTCTTTTGAGGAGACTTTTTAGGGATTTTGTTAACCCTAATACTTCTCTTCCTCTTGTTATCAGAGCTCGTGTCTTCTTTACTATGATACTGAGTGTTATATACATCTTTAGCCCTATTGACATCATTCCAGAAGGGATATTGGGAATAATTGGTCTGTTGGATGATGTCCTAATTGCACTAATCTTCTTCCTACATGTTGCTGCCCTTTATAGATCAGTACTTTACCTCCGTCACGGGGGTTCATGA 564 0.3972 MDSRRMEEEEEGPPSNDLCSICHGNFQNPCQANCSHWFCANCIMLVWRHSSGIQPCKCPLCRRPINLLVPTNNDDPQTMSEIQTYNRVFGQQSNAPITQRILDLPFLLRRLFRDFVNPNTSLPLVIRARVFFTMILSVIYIFSPIDIIPEGILGIIGLLDDVLIALIFFLHVAALYRSVLYLRHGGS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00041 187 ProSiteProfiles Zinc finger RING-type profile. 19 62 IPR001841 -
Trre6g00041 187 Pfam Zinc finger, C3HC4 type (RING finger) 16 66 - -
Trre6g00041 187 SMART ring_2 19 61 IPR001841 -
Trre6g00041 187 SUPERFAMILY RING/U-box 13 74 - -
Trre6g00041 187 Pfam Protein of unknown function (DUF1232) 133 166 IPR010652 -
Trre6g00041 187 CDD RING-HC_RNF113A_B 10 70 - -
Trre6g00041 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 101 IPR013083 -
Trre6g00041 187 PANTHER UNCHARACTERIZED 7 184 IPR038896 GO:0061630
Trre6g00041 187 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00041 Trre-Chr6 305020 306393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00041 44 187 C3H Transcription Factor Family AT1G72175 63.816 8.37e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00041 K15707 - thj:104809729 229.565