Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00028 ATGCCAACAAGGGTTGTTGGTCAAGATTTGAGAGCAAACTTGGGATTAACCTTGGTGAAGGTCAAGGTTGACGGTCAAGATAAGTCATCATCAAATAGACGAATTTGTATTATATTGTATCTTCTTATTACCTTCTTTCAACAGTTAGGTTTTTCGTTGGCTCAAACGATGACTCGCGTCTATATTGGAAATCTTGATTCACGAATTTCTGAAAGGGATCTTGAAGATGATTTTCATGTTTTTGGAGTTATACGAAGTGTTTGGGTTGCAAGGAGGCCACCTGGTTATGCTTTCATTGATTTTGATGACCGCAGAGATGCGCTCGATGCTATTCGTGAATTAGATGATGACGAGGAATCAGCACAATGCTTACTTTCTGGTCTACTAATTAGAAGTTTGAGTATCAGTACCTCAAACTGA 420 0.3881 MPTRVVGQDLRANLGLTLVKVKVDGQDKSSSNRRICIILYLLITFFQQLGFSLAQTMTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDDDEESAQCLLSGLLIRSLSISTSN 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00028 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 139 IPR000504 GO:0003723
Trre6g00028 139 SUPERFAMILY RNA-binding domain, RBD 56 116 IPR035979 GO:0003676
Trre6g00028 139 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 58 115 - -
Trre6g00028 139 Gene3D - 52 124 IPR012677 -
Trre6g00028 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 116 IPR000504 GO:0003723
Trre6g00028 139 SMART rrm1_1 59 126 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00028 Trre-Chr6 224609 227935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00028 55 127 Eukaryotic Initiation Factors Gene Family AT2G36660 35.065 1.39e-07 47.4