Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00027 ATGAATGATAGTAGAAAAATGGTTTCATTATATTGTTGCAGCATAAGGTCAACAATTGATAGGTACAAAAAGGCATGTTCAGATCATTCAAGTACCACTACTACTACTGAGATTAATGCTCAGTATTATCAGCAAGAATCTGCAAAGCTGCGACAACAAATACAGATGCTGCAAAACTCTAACAGGCACTTGATGGGTGATGCTTTAAGCACATTGACTGTCAAGGAACTTAAGCAGTTGGAGAACAGACTTGAAAGAGGAATCACTAGAATTAGATCTAAGAAACATGAGATGCTGCTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAGAATCTTTGTCTTCGGACTAAGATAAATGATGTTGAGAGGCTTCCTCAAGTAAACATGGTTTCTGGACAAGAGCTTAATGCAATTCAGGCATTAGCTTCTCGTAATTTCTTCGATCCAAACATGATGGAAGGTGAAACTTCCTACCATCAATCAGATAAGAAGATTCTTCATCTTGGGTAA 528 0.375 MNDSRKMVSLYCCSIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKINDVERLPQVNMVSGQELNAIQALASRNFFDPNMMEGETSYHQSDKKILHLG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00027 175 Coils Coil 77 97 - -
Trre6g00027 175 Pfam K-box region 37 124 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre6g00027 175 Coils Coil 40 60 - -
Trre6g00027 175 ProSiteProfiles K-box domain profile. 40 130 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00027 Trre-Chr6 215802 217123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00027 14 175 MADS-box Gene Family AT4G09960 65.882 5.14e-72 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00027 K09264 - gmx:100301905 291.197