Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00022 ATGGAGGATTCCAAACATTTTATGATAGCCATACTTCCTTCACCCTTTCATACCAAACAAATAAGAATTCCAGATGAGTTTATAACAAGATTTGGAAATGAACTCGGCAATGTGGCTAAGATTACTGTTCCCAATGGTCGTGAATGGGACATGGAACTGAAGAAATGTGGCAACGGCGTTTTCCTTTCCAACAAATGGGAAGAGTTTGCAGAATACTATTCTATCAGTTATGGTTGTTATTTAGATTTCAAGTATGAAGGGAACTCGGAGTTTAATGTTGTTATATATGATACAACTTCTGTTGAAATTTGCTATCCATTCAAAACTCCAAGTACTAATGGAGAATCAAACACAAATTGTCCTAGTCCTAAGAAAAAGGTCAAAAACATGTCTAATTATTCTTCCAAAAGAGCAAAGGATACTGCCAATGAATGCAACCCAAAAAACCCTTCTTTTCGTTCAAGATACATTAAGGCCACACGGAGCGAATATGTGTTTGTTCATCGTGAATTTGCTGCAAAGTATCTGAAGCTAAAGGTTTCATTCAAGCTTCAAAATCCTCAAGGAAAACAGTGGGATGTTTCTTGTATATCGAATGATAAACGATCATCATCAATGCGAATAGCGAAGGGCCTTCCTGGATTCGCAAGGGAAAACAATCTGTTAAAGAATCATATTTATGAGTTTCAGCTGATCAAGATGAAGCCTGTTGTTGTGCTACTAGTTACATCATCTCACCTGCATCGCCAGCAAAATTGTGTTCTGTCATTGGCAGAGGAGGAAGTTAGGGAACCCAGGCATTTTAAGAAGGCCATACTTCCCTCACCCATTCATGCCAAACAAATTAAAATTCCAGATAACTTCATAACACTATTTGGTAATGAACTCAACAATGTTGCTAAAGTTACTGTTCCTGATGGTCGTGTATGGGACATAGAACTGAAGAAATGCGGAGAGAATGTTTTGTTTTGCAACAAATGGCAACAGTTTGCAGAATTTTATTCTATAGAATATGGTTGCTACCTGTCTTTCAAATATGAAGGGAAATCAATGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAGATTGTATATCCTCCTCCATTCAAAACTCCAAGTAATGATGGAGAACTATACACAAAGTGTCCTAGTCCTAGGAAAAGGCCCAGGGTTGAAATCAATGATGTTGATGATTTACCAAGTGATGATGAGGAGGATCAAGGATCAAAGAACCCTTCTTTTACTTGCATCATAAGGCATCGACGTATATATATGAAAGCAGATGTTGCTGTGAAGCTCCAGAATTGTAATGGAGAGCAATGGGAAATTTATTGCAGGTCTAATGATTATAAAAGTTCAGCAATGCGAACGGGGAGGGGATTCACTGAATTTTTAATGGACAACAATCTGTCAGACGGTGATGAATGCGAGGTTGAGTTGATTAAGAAAGCTCCAGTAGTGCTAAAATTACTCATTTCAACTACTAGCTAG 1494 0.3755 MEDSKHFMIAILPSPFHTKQIRIPDEFITRFGNELGNVAKITVPNGREWDMELKKCGNGVFLSNKWEEFAEYYSISYGCYLDFKYEGNSEFNVVIYDTTSVEICYPFKTPSTNGESNTNCPSPKKKVKNMSNYSSKRAKDTANECNPKNPSFRSRYIKATRSEYVFVHREFAAKYLKLKVSFKLQNPQGKQWDVSCISNDKRSSSMRIAKGLPGFARENNLLKNHIYEFQLIKMKPVVVLLVTSSHLHRQQNCVLSLAEEEVREPRHFKKAILPSPIHAKQIKIPDNFITLFGNELNNVAKVTVPDGRVWDIELKKCGENVLFCNKWQQFAEFYSIEYGCYLSFKYEGKSMFSVIIFDATSVEIVYPPPFKTPSNDGELYTKCPSPRKRPRVEINDVDDLPSDDEEDQGSKNPSFTCIIRHRRIYMKADVAVKLQNCNGEQWEIYCRSNDYKSSAMRTGRGFTEFLMDNNLSDGDECEVELIKKAPVVLKLLISTTS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00022 497 SMART B3_2 156 244 IPR003340 GO:0003677
Trre6g00022 497 SMART B3_2 268 360 IPR003340 GO:0003677
Trre6g00022 497 SMART B3_2 7 99 IPR003340 GO:0003677
Trre6g00022 497 Pfam B3 DNA binding domain 162 234 IPR003340 GO:0003677
Trre6g00022 497 Pfam B3 DNA binding domain 14 96 IPR003340 GO:0003677
Trre6g00022 497 Gene3D - 415 495 IPR015300 -
Trre6g00022 497 Gene3D - 1 100 IPR015300 -
Trre6g00022 497 Gene3D - 259 361 IPR015300 -
Trre6g00022 497 CDD B3_DNA 169 241 IPR003340 GO:0003677
Trre6g00022 497 MobiDBLite consensus disorder prediction 382 397 - -
Trre6g00022 497 SUPERFAMILY DNA-binding pseudobarrel domain 264 359 IPR015300 -
Trre6g00022 497 ProSiteProfiles B3 DNA-binding domain profile. 267 360 IPR003340 GO:0003677
Trre6g00022 497 CDD B3_DNA 266 358 IPR003340 GO:0003677
Trre6g00022 497 SUPERFAMILY DNA-binding pseudobarrel domain 148 245 IPR015300 -
Trre6g00022 497 PANTHER B3 DOMAIN-CONTAINING 261 484 - -
Trre6g00022 497 CDD B3_DNA 5 97 IPR003340 GO:0003677
Trre6g00022 497 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Trre6g00022 497 Gene3D - 130 248 IPR015300 -
Trre6g00022 497 MobiDBLite consensus disorder prediction 376 411 - -
Trre6g00022 497 SUPERFAMILY DNA-binding pseudobarrel domain 4 98 IPR015300 -
Trre6g00022 497 SUPERFAMILY DNA-binding pseudobarrel domain 410 485 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00022 Trre-Chr6 193882 197829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00022 268 491 B3 DNA Binding Superfamily AT3G18990 27.576 1.72e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g00022 B3 1.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00022 - - tpra:123915429 632.098